hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-09541200/chunk_1/iprscan-20080809-09541200.nocrc
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Query sequence: fg06748
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.ls Helix-loop-helix DNA-binding domain             81.4    2.7e-21   1
PF00010.16.fs Helix-loop-helix DNA-binding domain             79.4      1e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1     103   154 ..     1    53 []    79.4    1e-20
PF00010.16.ls   1/1     103   154 ..     1    53 []    81.4  2.7e-21

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 103 to 154: score 79.4, E = 1e-20
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      rR+ +n  ERrR+++iN +f++L++l+P+  +++KlsKa+iL+++ e
     fg06748   103    RREIANSNERRRMQSINAGFQSLKTLIPH-TDGEKLSKAAILQQTAE 148  

                   YIksLq<-*
                   YI sL+   
     fg06748   149 YIFSLE    154  

PF00010.16.ls: domain 1 of 1, from 103 to 154: score 81.4, E = 2.7e-21
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      rR+ +n  ERrR+++iN +f++L++l+P+  +++KlsKa+iL+++ e
     fg06748   103    RREIANSNERRRMQSINAGFQSLKTLIPH-TDGEKLSKAAILQQTAE 148  

                   YIksLq<-*
                   YI sL+   
     fg06748   149 YIFSLE    154  

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