hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-10003825/chunk_1/iprscan-20080809-10003825.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fg06951
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00656.12.fs Caspase domain                            261.4    2.2e-81   1
PF00656.12.ls Caspase domain                            252.3    9.2e-73   1
PF00619.12.ls Caspase recruitment domain                 91.5    2.4e-24   1
PF00619.12.fs Caspase recruitment domain                 89.5    3.7e-24   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00619.12.fs   1/1      41   127 ..     1    89 []    89.5  3.7e-24
PF00619.12.ls   1/1      41   127 ..     1    89 []    91.5  2.4e-24
PF00656.12.fs   1/1     196   426 ..     1   234 [.   261.4  2.2e-81
PF00656.12.ls   1/1     196   436 ..     1   257 []   252.3  9.2e-73

Alignments of top-scoring domains:
PF00619.12.fs: domain 1 of 1, from 41 to 127: score 89.5, E = 3.7e-24
                   *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaa.nt
                      r+llr++R++Lv++l+   +d+l+D+Ll+++++   ++E I++a+ +
     fg06951    41    RRLLRRCRLRLVEELQ---VDQLWDALLSRELFRPHMIEDIQRAgSG 84   

                   trrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-*
                   +rrd+ar+L+  ++++G++a+++F+ +L++tgq  La++l+     
     fg06951    85 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLRTN    127  

PF00619.12.ls: domain 1 of 1, from 41 to 127: score 91.5, E = 2.4e-24
                   *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaa.nt
                      r+llr++R++Lv++l+   +d+l+D+Ll+++++   ++E I++a+ +
     fg06951    41    RRLLRRCRLRLVEELQ---VDQLWDALLSRELFRPHMIEDIQRAgSG 84   

                   trrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-*
                   +rrd+ar+L+  ++++G++a+++F+ +L++tgq  La++l+     
     fg06951    85 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLRTN    127  

PF00656.12.fs: domain 1 of 1, from 196 to 426: score 261.4, E = 2.2e-81
                   *->glALiIgnnyfgtat.laeLrGcdnDaealaklLverlGFeVevIvi
                      g++LiI+n++f+  ++l++++G++ D+e+l++ + ++l+F Vev   
     fg06951   196    GHCLIINNVNFCRESgLRTRTGSNIDCEKLRRRF-SSLHFMVEV--- 238  

                   LielltkddqlTaeeirralrefaksadHsdgDptslvvvysgHG.seqv
                         k d lTa+ +  al e+a + dH++ D  ++vvv+++HG + + 
     fg06951   239 ------KGD-LTAKKMVLALLELA-QQDHGALD--CCVVVILSHGcQAS- 277  

                   pgedigggiiygtDgyllvPvDanligidtdlrlddvfnglncpsLagKP
                     + +++g +ygtDg+  v+v+           + ++fng++cpsL gKP
     fg06951   278 --HLQFPGAVYGTDGCP-VSVEK----------IVNIFNGTSCPSLGGKP 314  

                   KllfiidACRggelddgvkvd.............................
                   K lf+i+AC g++ d+g++v+++++++++++++++++ ++  ++ ++ + 
     fg06951   315 K-LFFIQACGGEQKDHGFEVAstspedespgsnpepdatpfqeglrtfdq 363  

                   .aglskipaeadflvaysttpgyvSwrntgagSwFiqaLcqvleeygkkp
                    +++s++p+++d++v+yst pg+vSwr++++gSw++ +L +++e+++++ 
     fg06951   364 lDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHS- 412  

                   ktaygldlldiltrVnrkV<-*
                        +dl+++l rV+ ++   
     fg06951   413 -----EDLQSLLLRVSAAF    426  

PF00656.12.ls: domain 1 of 1, from 196 to 436: score 252.3, E = 9.2e-73
                   *->glALiIgnnyfgtat.laeLrGcdnDaealaklLverlGFeVevIvi
                      g++LiI+n++f+  ++l++++G++ D+e+l++ + ++l+F Vev   
     fg06951   196    GHCLIINNVNFCRESgLRTRTGSNIDCEKLRRRF-SSLHFMVEV--- 238  

                   LielltkddqlTaeeirralrefaksadHsdgDptslvvvysgHG.seqv
                         k d lTa+ +  al e+a + dH++ D  ++vvv+++HG + + 
     fg06951   239 ------KGD-LTAKKMVLALLELA-QQDHGALD--CCVVVILSHGcQAS- 277  

                   pgedigggiiygtDgyllvPvDanligidtdlrlddvfnglncpsLagKP
                     + +++g +ygtDg+  v+v+           + ++fng++cpsL gKP
     fg06951   278 --HLQFPGAVYGTDGCP-VSVEK----------IVNIFNGTSCPSLGGKP 314  

                   KllfiidACRggelddgvkvd.............................
                   K lf+i+AC g++ d+g++v+++++++++++++++++ ++  ++ ++ + 
     fg06951   315 K-LFFIQACGGEQKDHGFEVAstspedespgsnpepdatpfqeglrtfdq 363  

                   .aglskipaeadflvaysttpgyvSwrntgagSwFiqaLcqvleeygkkp
                    +++s++p+++d++v+yst pg+vSwr++++gSw++ +L +++e+++++ 
     fg06951   364 lDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHS- 412  

                   ktaygldlldiltrVnrkVakatgkkQmPclssstltkklyf<-*
                        +dl+++l rV+ ++           l +     +l+    
     fg06951   413 -----EDLQSLLLRVSAAF-----------L-CKGE-GRLLR    436  

//