hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-10003825/chunk_1/iprscan-20080809-10003825.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fg06951 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00115 384.4 6.7e-111 1 SM00114 137.0 2.1e-36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00114 1/1 36 126 .. 1 96 [] 137.0 2.1e-36 SM00115 1/1 187 443 .. 1 282 [] 384.4 6.7e-111 Alignments of top-scoring domains: SM00114: domain 1 of 1, from 36 to 126: score 137.0, E = 2.1e-36 *->MeerdkrllrrnrvrlveelgvdiLdelLdyLveknvltekeeEaIk M+e+d+rllrr+r+rlveel+vd +l+d+L+++++++++++E+I+ fg06951 36 MDEADRRLLRRCRLRLVEELQVD---QLWDALLSRELFRPHMIEDIQ 79 aattklrdDkarelvdslqkrGsqafdtfldsLqeFPtnqekLadvLel< +a++++r+D+ar+l+++l++rGsqa+++f+++L++ t+q++La++L++ fg06951 80 RAGSGSRRDQARQLIIDLETRGSQALPLFISCLED--TGQDMLASFLRT 126 -* fg06951 - - SM00115: domain 1 of 1, from 187 to 443: score 384.4, E = 6.7e-111 *->iYrmnskprRtGlALIINNenFdsesgLkrRnGTdvDaenLtelFes +Y ++++p +G++LIINN+nF++esgL++R+G ++D+e+L+++F+s fg06951 187 AYILSMEP--CGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSS 231 LGYeVkvknnLtaeeMleelkefAelpeHsdsDSfvlVlLSHG....... L+++V+vk +Lta++M+++l e A+ ++H D++v+V+LSHG + ++ + fg06951 232 LHFMVEVKGDLTAKKMVLALLELAQ-QDHGALDCCVVVILSHGcqashlq 280 eeggiyGtDgsekkpvhdplkideIfslFngdnCpsLagKPKlFfIQACR + g++yGtDg +p+++++I+++Fng++CpsL gKPKlFfIQAC fg06951 281 FPGAVYGTDG-------CPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACG 323 Gdeldggvpvedsvaeqpspksvesddargtetdsgtseeleddavydki G+++d+g++v ++++e++sp+s++++da t++++g++++++ da+ ++ fg06951 324 GEQKDHGFEVASTSPEDESPGSNPEPDA--TPFQEGLRTFDQLDAIS-SL 370 pveADFlaaySTtPgyvSwRnptrGSWFIqsLcevlkeyaksldlldiLt p+ +D++++yST+Pg+vSwR+p++GSW+++ L ++++++a+s+dl+++L+ fg06951 371 PTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLL 420 eVnqkVavkfesnqpddptsnakkQmPtitsmTLtKkLyffp<-* +V + +k+e+ + L+ + fg06951 421 RVSAAFLCKGEG------------------RL-LRGSVSSWG 443 //