hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-10073448/chunk_1/iprscan-20080809-10073448.nocrc
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Query sequence: fg07014
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        82.0    1.7e-21   4
PF00400.22.fs WD domain, G-beta repeat                        75.8    2.1e-20   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   2/4      80   118 ..     1    38 []    20.8  6.9e-05
PF00400.22.ls   2/4      80   118 ..     1    38 []    22.8   0.0012
PF00400.22.fs   3/4     122   160 ..     1    38 []    28.8  3.8e-07
PF00400.22.ls   3/4     122   160 ..     1    38 []    30.8  4.5e-06
PF00400.22.fs   4/4     164   252 ..     1    38 []    18.2  0.00036

Alignments of top-scoring domains:
PF00400.22.fs: domain 2 of 4, from 80 to 118: score 20.8, E = 6.9e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++  ++  +++ +  afspd g++la+ S Dg +++++   
     fg07014    80    RNPLlKWtVGEGALNEFAFSPD-GKFLACVSQDGFLRVFN    118  

PF00400.22.ls: domain 2 of 4, from 80 to 118: score 22.8, E = 0.0012
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++  ++  +++ +  afspd g++la+ S Dg +++++   
     fg07014    80    RNPLlKWtVGEGALNEFAFSPD-GKFLACVSQDGFLRVFN    118  

PF00400.22.fs: domain 3 of 4, from 122 to 160: score 28.8, E = 3.8e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e+ ++ +   ++  cv++spd g+++++g++D  + +W+   
     fg07014   122    VELHgTMkSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWS    160  

PF00400.22.ls: domain 3 of 4, from 122 to 160: score 30.8, E = 4.5e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e+ ++ +   ++  cv++spd g+++++g++D  + +W+   
     fg07014   122    VELHgTMkSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWS    160  

PF00400.22.fs: domain 4 of 4, from 164 to 252: score 18.2, E = 0.00036
                   *->geck.vl.gHtstVtcvafspd.........................
                      + ++   +gH+s+V+ vaf+p +++ +++++ + ++++++  +    
     fg07014   164    CRVIaRGhGHKSWVSVVAFDPYttsveegdpmefsgsdedfqdllhf 210  

                   ........................sgpllasgSrDgtikiWd<-*
                   + + ++++ +  ++ +++++ + +   ++ s + D  +++Wd   
     fg07014   211 grdranstqsrlskrnstdsrpvsVTYRFGSVGQDTQLCLWD    252  

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