hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-10202114/chunk_1/iprscan-20080809-10202114.nocrc
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Query sequence: fh00134
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00536.20.fs SAM domain (Sterile alpha motif)                92.6    1.2e-26   3
PF00536.20.ls SAM domain (Sterile alpha motif)                81.2    2.9e-21   2
PF07647.7.fs SAM domain (Sterile alpha motif)                65.3    1.7e-18   3
PF07647.7.ls SAM domain (Sterile alpha motif)                62.8      1e-15   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.ls   1/3     906   975 ..     1    72 []    12.4    0.066
PF00536.20.fs   1/3     907   973 ..     1    65 []    22.0  7.4e-06
PF00536.20.ls   1/2     907   973 ..     1    65 []    24.0  0.00048
PF00536.20.fs   2/3    1029  1093 ..     1    65 []    55.2  1.2e-15
PF00536.20.ls   2/2    1029  1093 ..     1    65 []    57.2    5e-14
PF07647.7.ls   2/3    1032  1095 ..     1    72 []    16.2    0.026
PF07647.7.fs   2/3    1038  1095 ..    11    72 .]    22.0  8.8e-06
PF07647.7.ls   3/3    1116  1188 ..     1    72 []    34.2  4.1e-07
PF07647.7.fs   3/3    1116  1188 ..     1    72 []    32.2  8.4e-09

Alignments of top-scoring domains:
PF07647.7.ls: domain 1 of 3, from 906 to 975: score 12.4, E = 0.066
                   *->veswslesvaeWLe.siglegqYkdnFsdqgitglellllrlteedL
                        +w+ ++v +WLe  +g+ +    +  ++++ ++ ++   l+  + 
     fh00134   906    FAQWDGPTVVAWLElWLGM-PAWYVAACRANVKSGAIM-SALSDTEI 950  

                   aklalGitsvghRkkilkkiqelkqq<-*
                    + ++Gi+++ hR+k+  +iqe+      
     fh00134   951 -QREIGISNPLHRLKLRLAIQEMVSL    975  

PF00536.20.fs: domain 1 of 3, from 907 to 973: score 22.0, E = 7.4e-06
                   *->dgwsfesVgeWLe.sigl.gqYidnFlsagyidgdtllqlteeDLed
                       +w+  +V  WLe  +g+++ Y+ +  +a+ ++g  ++ l++ ++++
     fh00134   907    AQWDGPTVVAWLElWLGMpAWYVAAC-RANVKSGAIMSALSDTEIQR 952  

                   .lGvtllGHrkKIlssIqgLk<-*
                   ++G+ ++ Hr+K+ ++Iq +    
     fh00134   953 eIGISNPLHRLKLRLAIQEMV    973  

PF00536.20.ls: domain 1 of 2, from 907 to 973: score 24.0, E = 0.00048
                   *->dgwsfesVgeWLe.sigl.gqYidnFlsagyidgdtllqlteeDLed
                       +w+  +V  WLe  +g+++ Y+ +  +a+ ++g  ++ l++ ++++
     fh00134   907    AQWDGPTVVAWLElWLGMpAWYVAAC-RANVKSGAIMSALSDTEIQR 952  

                   .lGvtllGHrkKIlssIqgLk<-*
                   ++G+ ++ Hr+K+ ++Iq +    
     fh00134   953 eIGISNPLHRLKLRLAIQEMV    973  

PF00536.20.fs: domain 2 of 3, from 1029 to 1093: score 55.2, E = 1.2e-15
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                      d ++ +   eWL s+gl+qY++ F +  ++d ++l +lt+ DL+ +l
     fh00134  1029    DMNHEWIGNEWLPSLGLPQYRSYF-MECLVDARMLDHLTKKDLRVhL 1074 

                   GvtllGHrkKIlssIqgLk<-*
                   +++   Hr  +++ I  Lk   
     fh00134  1075 KMVDSFHRTSLQYGIMCLK    1093 

PF00536.20.ls: domain 2 of 2, from 1029 to 1093: score 57.2, E = 5e-14
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                      d ++ +   eWL s+gl+qY++ F +  ++d ++l +lt+ DL+ +l
     fh00134  1029    DMNHEWIGNEWLPSLGLPQYRSYF-MECLVDARMLDHLTKKDLRVhL 1074 

                   GvtllGHrkKIlssIqgLk<-*
                   +++   Hr  +++ I  Lk   
     fh00134  1075 KMVDSFHRTSLQYGIMCLK    1093 

PF07647.7.ls: domain 2 of 3, from 1032 to 1095: score 16.2, E = 0.026
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                       e   +    eWL s+gl +qY+ +F+++ ++  ++l  +lt  dL 
     fh00134  1032    HEWIGN----EWLPSLGL-PQYRSYFMECLVDA-RML-DHLTKKDL- 1070 

                   klalGitsvghRkkilkkiqelkqq<-*
                     +l++ +  hR  +  +i +lk     
     fh00134  1071 RVHLKMVDSFHRTSLQYGIMCLKRL    1095 

PF07647.7.fs: domain 2 of 3, from 1038 to 1095: score 22.0, E = 8.8e-06
                   *->eWLesiglegqYkdnFsdqgitglellllrlteedLaklalGitsvg
                      eWL s+gl +qY+ +F+++ ++  ++l  +lt  dL   +l++ +  
     fh00134  1038    EWLPSLGL-PQYRSYFMECLVDA-RML-DHLTKKDL-RVHLKMVDSF 1080 

                   hRkkilkkiqelkqq<-*
                   hR  +  +i +lk     
     fh00134  1081 HRTSLQYGIMCLKRL    1095 

PF07647.7.ls: domain 3 of 3, from 1116 to 1188: score 34.2, E = 4.1e-07
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v +ws+++v  W ++igl ++Y+ n ++ g++g  + l+++++ + L
     fh00134  1116    VLVWSNDRVIRWIQAIGL-REYANNILESGVHGSLIALdENFDYSSL 1161 

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a +l+++ ++++ R+ + ++ ++l+     
     fh00134  1162 AlLLQIPTQNTQARQILEREYNNLLAL    1188 

PF07647.7.fs: domain 3 of 3, from 1116 to 1188: score 32.2, E = 8.4e-09
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v +ws+++v  W ++igl ++Y+ n ++ g++g  + l+++++ + L
     fh00134  1116    VLVWSNDRVIRWIQAIGL-REYANNILESGVHGSLIALdENFDYSSL 1161 

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a +l+++ ++++ R+ + ++ ++l+     
     fh00134  1162 AlLLQIPTQNTQARQILEREYNNLLAL    1188 

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