hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-10202114/chunk_1/iprscan-20080809-10202114.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh00134
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00454                                                 130.1    2.5e-34   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00454    1/3     906   975 ..     1    67 []    48.3    1e-09
SM00454    2/3    1028  1095 ..     1    67 []    36.9  2.8e-06
SM00454    3/3    1116  1188 ..     1    67 []    44.9  1.1e-08

Alignments of top-scoring domains:
SM00454: domain 1 of 3, from 906 to 975: score 48.3, E = 1e-09
                   *->vs.wspesVaeWLes.igleq.YadnFrkngidgeelllltseedLk
                      + +w+ ++V +WLe  +g++  Y+ + r+n  +g+++ +l++ e   
     fh00134   906    FAqWDGPTVVAWLELwLGMPAwYVAACRANVKSGAIMSALSDTEIQR 952  

                   elGitllGhRkkIlsaiqklkeq<-*
                   e+Gi+++ hR+k+  aiq++ +    
     fh00134   953 EIGISNPLHRLKLRLAIQEMVSL    975  

SM00454: domain 2 of 3, from 1028 to 1095: score 36.9, E = 2.8e-06
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       + +++    eWL s+gl+qY++ F+++ +d ++l +lt  ++  +l
     fh00134  1028    GDmNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHL 1074 

                   GitllGhRkkIlsaiqklkeq<-*
                   ++ +  hR  ++++i +lk     
     fh00134  1075 KMVDSFHRTSLQYGIMCLKRL    1095 

SM00454: domain 3 of 3, from 1116 to 1188: score 44.9, E = 1.1e-08
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.....see
                      v  ws++ V++W+++igl +Ya+n ++ g++g++ +l ++ + +s++
     fh00134  1116    VLvWSNDRVIRWIQAIGLREYANNILESGVHGSLIALDEnfdysSLA 1162 

                   dLkelGitllGhRkkIlsaiqklkeq<-*
                   +L+++  +++++R+ + ++ + l++    
     fh00134  1163 LLLQIPTQNTQARQILEREYNNLLAL    1188 

//