hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-16192294/chunk_1/iprscan-20090630-16192294.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh00176s2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 290.4 1.3e-82 1 SM00219 -43.4 1.9e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 21 333 .. 1 280 [] -43.4 1.9e-08 SM00220 1/1 21 335 .. 1 231 [] 290.4 1.3e-82 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 21 to 333: score -43.4, E = 1.9e-08 *->ltlgkkLGeGaFGeVykGtlk.....ieVAVKtLkeda.keeFlrEa g k G+G +G Vyk++ k+++++ e A K + + +rE+ fh00176s2 21 EYEGCKVGRGTYGHVYKARRKdgkdeKEYALKQIEGTGiSMSACREI 67 kiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLr ++++l kHpN+++L v +++ ++ +++++ y+e+ dL + ++ fh00176s2 68 ALLREL--KHPNVIALQKVFLSH-----SDRKVWLLFDYAEH-DLWHIIK 109 knrpk........lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLv +r + ++++ +l+ s s +QI +G YL+ + + HRDL N+Lv fh00176s2 110 FHRASkankkpmqLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILV 159 genk....vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirW +++++++vKI+D G +R + + + + + ++ W fh00176s2 160 MGEGpergRVKIADMGFARLFNSP--------LKPLA---DLDPVVVTFW 198 m.APEsl.kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneev ++APE l + +t + D+W+ G E++t + +++ fh00176s2 199 YrAPELLlGARHYTKAIDIWAIGCIFAELLTSEPIFHCR-----QEDIKT 243 leylkkGyRlpkPendlpiS.............................. + + ++ + + +++ ++ ++ ++ ++ +++ ++++ + fh00176s2 244 SNPFHHDQLDRIFSV---MGfpadkdwedirkmpeyptlqkdfrrttyan 290 .........s.vtCPdelYdlMlqCWaedPedRPtFselverl<-* ++ + ++ +v ++++ l ++ dP +R t ++ ++ fh00176s2 291 sslikymekHkVKPDSKVFLLLQKLLTMDPTKRITSEQALQDP 333 SM00220: domain 1 of 1, from 21 to 335: score 290.4, E = 1.3e-82 *->YellkklGkGaFGkVylardkk..tgrlvAiKvik.....erilrEi + k+G+G++G Vy+ar k++++ +++A+K+i +++ + +++rEi fh00176s2 21 EYEGCKVGRGTYGHVYKARRKDgkDEKEYALKQIEgtgisMSACREI 67 kiLkk.dHPNIVkLydvfed...dklylVmEyceGdlGdLfdllkkrgrr ++L++ +HPN++ L vf ++++ k++l ++y+e+ dL +++k ++ fh00176s2 68 ALLRElKHPNVIALQKVFLShsdRKVWLLFDYAEH---DLWHIIKFHRAS 114 glr...kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds... + ++++ +l+ ++++++++Qil+++ YLH ++++HRDLKP+NiL+ +++ fh00176s2 115 KANkkpMQLPRsMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGegp 164 ...hvKlaDFGlArql..........ttfvGTpeYmAPEvl....gYgkp ++++vK+aD G+Ar+++++ ++ + + +v+T +Y+APE+l + ++Y+k fh00176s2 165 ergRVKIADMGFARLFnsplkpladlDPVVVTFWYRAPELLlgarHYTK- 213 avDiWSlGcilyElltGkpPFp...............qldlifkkig... a+DiW++Gci++Ellt +p F+ ++++ +++++ +++qld+if ++g + fh00176s2 214 AIDIWAIGCIFAELLTSEPIFHcrqediktsnpfhhdQLDRIFSVMGfpa 263 .........................................SpeakdLik ++++++ ++ +++++ ++ +++++ +++ ++ ++++ ++++ + L++ fh00176s2 264 dkdwedirkmpeyptlqkdfrrttyansslikymekhkvkpDSKVFLLLQ 313 klLvkdPekRlta.eaLedeldikaHPff<-* klL++dP+kR+t ++aL+ +P+f fh00176s2 314 KLLTMDPTKRITSeQALQ-------DPYF 335 //