hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-10340666/chunk_1/iprscan-20080809-10340666.nocrc
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Query sequence: fh00181
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08788.1.fs NHR2 domain like                               172.4    1.2e-51   1
PF08788.1.ls NHR2 domain like                               174.4    2.6e-49   1
PF01753.9.fs MYND finger                                     59.6    1.5e-18   1
PF01753.9.ls MYND finger                                     61.5    2.6e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08788.1.fs   1/1     114   180 ..     1    67 []   172.4  1.2e-51
PF08788.1.ls   1/1     114   180 ..     1    67 []   174.4  2.6e-49
PF01753.9.fs   1/1     289   325 ..     1    43 []    59.6  1.5e-18
PF01753.9.ls   1/1     289   325 ..     1    43 []    61.5  2.6e-15

Alignments of top-scoring domains:
PF08788.1.fs: domain 1 of 1, from 114 to 180: score 172.4, E = 1.2e-51
                   *->qeElvDHRLtdREWAdEWkHLDHvLnCimdmvEKtRRslavLRRCqE
                      q+ElvDHRLt+REWAdEWkHLDH+LnCim+mvEKtRRs+avLRRCqE
     fh00181   114    QDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQE 160  

                   sDREELnYWkRRyseaedlr<-*
                   sDREELnYWkRRy+e+++lr   
     fh00181   161 SDREELNYWKRRYNENTELR    180  

PF08788.1.ls: domain 1 of 1, from 114 to 180: score 174.4, E = 2.6e-49
                   *->qeElvDHRLtdREWAdEWkHLDHvLnCimdmvEKtRRslavLRRCqE
                      q+ElvDHRLt+REWAdEWkHLDH+LnCim+mvEKtRRs+avLRRCqE
     fh00181   114    QDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQE 160  

                   sDREELnYWkRRyseaedlr<-*
                   sDREELnYWkRRy+e+++lr   
     fh00181   161 SDREELNYWKRRYNENTELR    180  

PF01753.9.fs: domain 1 of 1, from 289 to 325: score 59.6, E = 1.5e-18
                   *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
                      C+nCgr+a++     +Cs+C+ arYC  +CQ+kdW+  H+r C   
     fh00181   289    CWNCGRKASE-----TCSGCNIARYCGSFCQHKDWE-RHHRLC    325  

PF01753.9.ls: domain 1 of 1, from 289 to 325: score 61.5, E = 2.6e-15
                   *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
                      C+nCgr+a++     +Cs+C+ arYC  +CQ+kdW+  H+r C   
     fh00181   289    CWNCGRKASE-----TCSGCNIARYCGSFCQHKDWE-RHHRLC    325  

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