hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-16263081/chunk_1/iprscan-20090630-16263081.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh00470s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00642.15.fs Zinc finger C-x8-C-x5-C-x3-H type (and simil 58.2 1.2e-18 4 PF00642.15.ls Zinc finger C-x8-C-x5-C-x3-H type (and simil 56.1 1.1e-13 4 PF00515.18.fs Tetratricopeptide repeat 39.5 3.2e-10 2 PF00515.18.ls Tetratricopeptide repeat 41.6 2.5e-09 2 PF07719.7.ls Tetratricopeptide repeat 36.1 1.2e-07 3 PF07719.7.fs Tetratricopeptide repeat 30.9 1.3e-07 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00515.18.ls 1/2 121 154 .. 1 34 [] 29.6 1e-05 PF00515.18.fs 1/2 121 154 .. 1 34 [] 27.6 7.6e-07 PF00515.18.fs 2/2 155 177 .. 1 23 [. 11.9 0.023 PF00515.18.ls 2/2 155 188 .. 1 34 [] 12.0 0.18 PF00642.15.ls 1/4 519 545 .. 1 27 [] 3.2 0.46 PF00642.15.ls 2/4 651 676 .. 1 27 [] 7.1 0.14 PF00642.15.fs 3/4 794 820 .. 1 27 [] 18.9 1.8e-05 PF00642.15.ls 3/4 794 820 .. 1 27 [] 20.8 0.0022 PF00642.15.fs 4/4 926 952 .. 1 27 [] 22.9 7.7e-07 PF00642.15.ls 4/4 926 952 .. 1 27 [] 24.9 0.00026 Alignments of top-scoring domains: PF00515.18.ls: domain 1 of 2, from 121 to 154: score 29.6, E = 1e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + n++++y+ +g y++A+e+ ekAL ld + fh00470s1 121 CKLHVNRAACYFTMGLYEKALEDSEKALGLDSES 154 PF00515.18.fs: domain 1 of 2, from 121 to 154: score 27.6, E = 7.6e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + n++++y+ +g y++A+e+ ekAL ld + fh00470s1 121 CKLHVNRAACYFTMGLYEKALEDSEKALGLDSES 154 PF00515.18.fs: domain 2 of 2, from 155 to 177: score 11.9, E = 0.023 *->aeayynlGnaylklgkydeAiea<-* +a+++++ a+ +lg+++eA e+ fh00470s1 155 IRALFRKARALNELGRHKEAYEC 177 PF00515.18.ls: domain 2 of 2, from 155 to 188: score 12.0, E = 0.18 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +a+++++ a+ +lg+++eA e+ ++ P++ fh00470s1 155 IRALFRKARALNELGRHKEAYECSSRCSLALPHD 188 PF00642.15.ls: domain 1 of 4, from 519 to 545: score 3.2, E = 0.46 *->yktelCrffsrtGtCkyGdrCkFaHge<-* + lC++ CkyGd+C Fa + fh00470s1 519 GSYYLCKDMINKQDCKYGDNCTFAYHQ 545 PF00642.15.ls: domain 2 of 4, from 651 to 676: score 7.1, E = 0.14 *->yktelCrffsrtGtCkyGdrCkFaHge<-* + Cr + C + d+C+FaH+ fh00470s1 651 FQFDVCR-HEVRYGCLREDSCHFAHSF 676 PF00642.15.fs: domain 3 of 4, from 794 to 820: score 18.9, E = 1.8e-05 *->yktelCrffsrtG.tCkyGdrCkFaHge<-* + + lC ++++G+ C+y +C+FaH++ fh00470s1 794 QQYDLCI-HAQNGrKCQYVGNCSFAHSP 820 PF00642.15.ls: domain 3 of 4, from 794 to 820: score 20.8, E = 0.0022 *->yktelCrffsrtG.tCkyGdrCkFaHge<-* + + lC ++++G+ C+y +C+FaH++ fh00470s1 794 QQYDLCI-HAQNGrKCQYVGNCSFAHSP 820 PF00642.15.fs: domain 4 of 4, from 926 to 952: score 22.9, E = 7.7e-07 *->yktelCrffsrtGtCkyGdrCkFaHge<-* +lC++ +++ +C+ Gd+C+ aHg+ fh00470s1 926 GEFRLCDRLQKGKACPDGDKCRCAHGQ 952 PF00642.15.ls: domain 4 of 4, from 926 to 952: score 24.9, E = 0.00026 *->yktelCrffsrtGtCkyGdrCkFaHge<-* +lC++ +++ +C+ Gd+C+ aHg+ fh00470s1 926 GEFRLCDRLQKGKACPDGDKCRCAHGQ 952 //