hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-16263081/chunk_1/iprscan-20090630-16263081.nocrc
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Query sequence: fh00470s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00028                                                  41.6      1e-07   2
SM00356                                                  35.4    7.6e-06   4

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00028     1/2     121   154 ..     1    34 []    28.4    0.001
SM00028     2/2     155   188 ..     1    34 []    13.3       16
SM00356     1/4     520   546 ..     1    31 []     5.1       25
SM00356     2/4     650   676 ..     1    31 []     5.3       24
SM00356     3/4     795   820 ..     1    31 []     8.4      9.6
SM00356     4/4     927   952 ..     1    31 []    16.6      0.9

Alignments of top-scoring domains:
SM00028: domain 1 of 2, from 121 to 154: score 28.4, E = 0.001
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       + + n++ +y+ +g y++A+e+ ekAL ld +    
   fh00470s1   121    CKLHVNRAACYFTMGLYEKALEDSEKALGLDSES    154  

SM00028: domain 2 of 2, from 155 to 188: score 13.3, E = 16
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++al++++ a+  lg+++eA e+ +++    P++   
   fh00470s1   155    IRALFRKARALNELGRHKEAYECSSRCSLALPHD    188  

SM00356: domain 1 of 4, from 520 to 546: score 5.1, E = 25
                   *->kyktelCkfFarrGppgyCpyGdrCkfa.Hpl<-*
                      +y   lCk+   +   + C+yGd+C fa H +   
   fh00470s1   520    SYY--LCKDM-INK--QDCKYGDNCTFAyHQE    546  

SM00356: domain 2 of 4, from 650 to 676: score 5.3, E = 24
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                       ++  +C++  r+G    C + d+C+faH+    
   fh00470s1   650    HFQFDVCRHEVRYG----CLREDSCHFAHSF    676  

SM00356: domain 3 of 4, from 795 to 820: score 8.4, E = 9.6
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                       y   lC   a++G+   C y  +C faH++   
   fh00470s1   795    QYD--LCI-HAQNGR--KCQYVGNCSFAHSP    820  

SM00356: domain 4 of 4, from 927 to 952: score 16.6, E = 0.9
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                       ++  lC++  ++G  + Cp Gd+C+ aH+    
   fh00470s1   927    EFR--LCDRL-QKG--KACPDGDKCRCAHGQ    952  

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