hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-10463019/chunk_1/iprscan-20080809-10463019.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh00964 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 404.4 1.5e-118 10 PF00023.20.fs Ankyrin repeat 388.3 1.1e-113 11 PF00791.10.ls ZU5 domain 238.4 1.4e-68 1 PF00791.10.fs ZU5 domain 236.5 5.4e-68 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.ls 1/10 9 41 .. 1 33 [] 38.5 2.1e-08 PF00023.20.fs 1/11 9 41 .. 1 33 [] 36.5 3.4e-09 PF00023.20.ls 2/10 42 74 .. 1 33 [] 42.0 1.8e-09 PF00023.20.fs 2/11 42 74 .. 1 33 [] 40.0 3.5e-10 PF00023.20.fs 3/11 75 107 .. 1 33 [] 42.2 8.7e-11 PF00023.20.ls 3/10 75 107 .. 1 33 [] 44.2 4.1e-10 PF00023.20.ls 4/10 108 140 .. 1 33 [] 41.4 2.9e-09 PF00023.20.fs 4/11 108 140 .. 1 33 [] 39.4 5.4e-10 PF00023.20.ls 5/10 141 173 .. 1 33 [] 37.7 3.6e-08 PF00023.20.fs 5/11 141 173 .. 1 33 [] 35.7 5.6e-09 PF00023.20.ls 6/10 174 206 .. 1 33 [] 47.0 5.9e-11 PF00023.20.fs 6/11 174 206 .. 1 33 [] 45.0 1.4e-11 PF00023.20.fs 7/11 207 239 .. 1 33 [] 28.0 8.1e-07 PF00023.20.ls 7/10 207 239 .. 1 33 [] 30.0 7.9e-06 PF00023.20.fs 8/11 240 272 .. 1 33 [] 41.3 1.5e-10 PF00023.20.ls 8/10 240 272 .. 1 33 [] 43.3 7.5e-10 PF00023.20.ls 9/10 273 305 .. 1 33 [] 39.6 9.9e-09 PF00023.20.fs 9/11 273 305 .. 1 33 [] 37.6 1.7e-09 PF00023.20.ls 10/10 306 338 .. 1 33 [] 40.6 4.9e-09 PF00023.20.fs 10/11 306 338 .. 1 33 [] 38.6 8.7e-10 PF00023.20.fs 11/11 339 359 .. 1 21 [. 3.9 4.3 PF00791.10.fs 1/1 515 619 .. 1 107 [] 236.5 5.4e-68 PF00791.10.ls 1/1 515 619 .. 1 107 [] 238.4 1.4e-68 Alignments of top-scoring domains: PF00023.20.ls: domain 1 of 10, from 9 to 41: score 38.5, E = 2.1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+Aa++g++evv++L++ GA + a+ + fh00964 9 RGETALHMAARSGQAEVVRYLVQDGAQVEAKAK 41 PF00023.20.fs: domain 1 of 11, from 9 to 41: score 36.5, E = 3.4e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+Aa++g++evv++L++ GA + a+ + fh00964 9 RGETALHMAARSGQAEVVRYLVQDGAQVEAKAK 41 PF00023.20.ls: domain 2 of 10, from 42 to 74: score 42.0, E = 1.8e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +TPLH+ a+ g +++v+ Ll+qGA++na + fh00964 42 DDQTPLHISARLGKADIVQQLLQQGASPNAATT 74 PF00023.20.fs: domain 2 of 11, from 42 to 74: score 40.0, E = 3.5e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +TPLH+ a+ g +++v+ Ll+qGA++na + fh00964 42 DDQTPLHISARLGKADIVQQLLQQGASPNAATT 74 PF00023.20.fs: domain 3 of 11, from 75 to 107: score 42.2, E = 8.7e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLHl a+ g+++v+ +Ll++GA+l ++++ fh00964 75 SGYTPLHLSAREGHEDVAAFLLDHGASLSITTK 107 PF00023.20.ls: domain 3 of 10, from 75 to 107: score 44.2, E = 4.1e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLHl a+ g+++v+ +Ll++GA+l ++++ fh00964 75 SGYTPLHLSAREGHEDVAAFLLDHGASLSITTK 107 PF00023.20.ls: domain 4 of 10, from 108 to 140: score 41.4, E = 2.9e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* GfTPLH+Aa++g lev+ lLl++ A+++a + fh00964 108 KGFTPLHVAAKYGKLEVANLLLQKSASPDAAGK 140 PF00023.20.fs: domain 4 of 11, from 108 to 140: score 39.4, E = 5.4e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* GfTPLH+Aa++g lev+ lLl++ A+++a + fh00964 108 KGFTPLHVAAKYGKLEVANLLLQKSASPDAAGK 140 PF00023.20.ls: domain 5 of 10, from 141 to 173: score 37.7, E = 3.6e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLH+Aa+++n +v+ lLl+qGA+++a + fh00964 141 SGLTPLHVAAHYDNQKVALLLLDQGASPHAAAK 173 PF00023.20.fs: domain 5 of 11, from 141 to 173: score 35.7, E = 5.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLH+Aa+++n +v+ lLl+qGA+++a + fh00964 141 SGLTPLHVAAHYDNQKVALLLLDQGASPHAAAK 173 PF00023.20.ls: domain 6 of 10, from 174 to 206: score 47.0, E = 5.9e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+Aa+++++++++ Ll++GAd na+++ fh00964 174 NGYTPLHIAAKKNQMDIATTLLEYGADANAVTR 206 PF00023.20.fs: domain 6 of 11, from 174 to 206: score 45.0, E = 1.4e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+Aa+++++++++ Ll++GAd na+++ fh00964 174 NGYTPLHIAAKKNQMDIATTLLEYGADANAVTR 206 PF00023.20.fs: domain 7 of 11, from 207 to 239: score 28.0, E = 8.1e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G HlAa+ g++++v+lLl++ A++n+ ++ fh00964 207 QGIASVHLAAQEGHVDMVSLLLGRNANVNLSNK 239 PF00023.20.ls: domain 7 of 10, from 207 to 239: score 30.0, E = 7.9e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G HlAa+ g++++v+lLl++ A++n+ ++ fh00964 207 QGIASVHLAAQEGHVDMVSLLLGRNANVNLSNK 239 PF00023.20.fs: domain 8 of 11, from 240 to 272: score 41.3, E = 1.5e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLHlAa+ ++++v++ L++qGA ++aq++ fh00964 240 SGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTK 272 PF00023.20.ls: domain 8 of 10, from 240 to 272: score 43.3, E = 7.5e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLHlAa+ ++++v++ L++qGA ++aq++ fh00964 240 SGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTK 272 PF00023.20.ls: domain 9 of 10, from 273 to 305: score 39.6, E = 9.9e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+ +++gn+++v +Ll++ A +na+++ fh00964 273 MGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTK 305 PF00023.20.fs: domain 9 of 11, from 273 to 305: score 37.6, E = 1.7e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+ +++gn+++v +Ll++ A +na+++ fh00964 273 MGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTK 305 PF00023.20.ls: domain 10 of 10, from 306 to 338: score 40.6, E = 4.9e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH Aa+ g++ ++ Ll++ A++n + fh00964 306 NGYTPLHQAAQQGHTHIINVLLQNNASPNELTV 338 PF00023.20.fs: domain 10 of 11, from 306 to 338: score 38.6, E = 8.7e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH Aa+ g++ ++ Ll++ A++n + fh00964 306 NGYTPLHQAAQQGHTHIINVLLQNNASPNELTV 338 PF00023.20.fs: domain 11 of 11, from 339 to 359: score 3.9, E = 4.3 *->dGfTPLHlAalrgnlevvklL<-* +G+T+L +A + g+++vv L fh00964 339 NGNTALGIARRLGYISVVDTL 359 PF00791.10.fs: domain 1 of 1, from 515 to 619: score 236.5, E = 5.4e-68 *->tsflvsgtfdarGGsLrgprHtGVsiiIPpgaipqgtrytcylvkhk + flvs+++darGGs+rg+rH+G++iiIPp++++++tr+tc+lvk++ fh00964 515 SRFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRH 561 kestpPPlDkeegetLlSpiVecGPtGalFlrPViLevPHcAslrpkewe k+++pPP+ +ege+L+S++Ve+GP+Ga+Fl+PVi+e+PH++s+r+ke+e fh00964 562 KLANPPPM--VEGEGLASRLVEMGPAGAQFLGPVIVEIPHFGSMRGKERE 609 lvlLrsdngg<-* l++Lrs+ng+ fh00964 610 LIVLRSENGE 619 PF00791.10.ls: domain 1 of 1, from 515 to 619: score 238.4, E = 1.4e-68 *->tsflvsgtfdarGGsLrgprHtGVsiiIPpgaipqgtrytcylvkhk + flvs+++darGGs+rg+rH+G++iiIPp++++++tr+tc+lvk++ fh00964 515 SRFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRH 561 kestpPPlDkeegetLlSpiVecGPtGalFlrPViLevPHcAslrpkewe k+++pPP+ +ege+L+S++Ve+GP+Ga+Fl+PVi+e+PH++s+r+ke+e fh00964 562 KLANPPPM--VEGEGLASRLVEMGPAGAQFLGPVIVEIPHFGSMRGKERE 609 lvlLrsdngg<-* l++Lrs+ng+ fh00964 610 LIVLRSENGE 619 //