hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-10534440/chunk_1/iprscan-20080809-10534440.nocrc
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Query sequence: fh02484
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF06312.3.fs  Neurexophilin                             689.8   4.9e-217   1
PF06312.3.ls  Neurexophilin                             691.8   4.7e-205   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF06312.3.fs    1/1      56   306 .]     1   286 []   689.8 4.9e-217
PF06312.3.ls    1/1      56   306 .]     1   286 []   691.8 4.7e-205

Alignments of top-scoring domains:
PF06312.3.fs: domain 1 of 1, from 56 to 306: score 689.8, E = 4.9e-217
                   *->qllrclvlflvqgslyLviCdqedgvpksEGLdwedkdatGlkvGsv
                      ql+rc+++flvqgslyLviC+q+dg+p+sE                 
     fh02484    56    QLTRCCFVFLVQGSLYLVICGQDDGPPGSE----------------- 85   

                   vdPerddselknrlrvsrKrssiskksrlafrGkendtdldlrydtPeas
                    dPerdd+e+++r+rv+rKr++is+ksr+++                 +s
     fh02484    86 -DPERDDHEGQPRPRVPRKRGHISPKSRPMA-----------------NS 117  

                   sledLwdwlanateiqeprprakrrpivktgKfKKmFGWGDFhSNIKTVk
                   +l++L++++++a++i++++p+++++++++++K+KK+FGWGDF+SNIKTV+
     fh02484   118 TLLGLLAPPGEAWGILGQPPNRPNHSPPPSAKVKKIFGWGDFYSNIKTVA 167  

                   LNLLiTGKIVDHGNGTFSVyFrHNsTGqGNvSvSLVPPsKvVEFeleqQi
                   LNLL+TGKIVDHGNGTFSV+F+HN+TGqGN+S+SLVPPsK+VEF++eqQi
     fh02484   168 LNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEFHQEQQI 217  

                   vieaKeSKsFNCRiEyEKvdrakktsLCnyDPsKiCyqeqtQShvsWlCS
                   +ieaK+SK+FNCR+E+EKv+r+++tsLC++DP+KiC+++++QS+++W+CS
     fh02484   218 FIEAKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCS 267  

                   kPFKViCiYIaFYStDYkLVQKVCPDYNYHSdTPYypSG<-*
                   +PFKV+C+YIaFYStDY+LVQKVCPDYNYHSdTPYypSG   
     fh02484   268 QPFKVVCVYIAFYSTDYRLVQKVCPDYNYHSDTPYYPSG    306  

PF06312.3.ls: domain 1 of 1, from 56 to 306: score 691.8, E = 4.7e-205
                   *->qllrclvlflvqgslyLviCdqedgvpksEGLdwedkdatGlkvGsv
                      ql+rc+++flvqgslyLviC+q+dg+p+sE                 
     fh02484    56    QLTRCCFVFLVQGSLYLVICGQDDGPPGSE----------------- 85   

                   vdPerddselknrlrvsrKrssiskksrlafrGkendtdldlrydtPeas
                    dPerdd+e+++r+rv+rKr++is+ksr+++                 +s
     fh02484    86 -DPERDDHEGQPRPRVPRKRGHISPKSRPMA-----------------NS 117  

                   sledLwdwlanateiqeprprakrrpivktgKfKKmFGWGDFhSNIKTVk
                   +l++L++++++a++i++++p+++++++++++K+KK+FGWGDF+SNIKTV+
     fh02484   118 TLLGLLAPPGEAWGILGQPPNRPNHSPPPSAKVKKIFGWGDFYSNIKTVA 167  

                   LNLLiTGKIVDHGNGTFSVyFrHNsTGqGNvSvSLVPPsKvVEFeleqQi
                   LNLL+TGKIVDHGNGTFSV+F+HN+TGqGN+S+SLVPPsK+VEF++eqQi
     fh02484   168 LNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEFHQEQQI 217  

                   vieaKeSKsFNCRiEyEKvdrakktsLCnyDPsKiCyqeqtQShvsWlCS
                   +ieaK+SK+FNCR+E+EKv+r+++tsLC++DP+KiC+++++QS+++W+CS
     fh02484   218 FIEAKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCS 267  

                   kPFKViCiYIaFYStDYkLVQKVCPDYNYHSdTPYypSG<-*
                   +PFKV+C+YIaFYStDY+LVQKVCPDYNYHSdTPYypSG   
     fh02484   268 QPFKVVCVYIAFYSTDYRLVQKVCPDYNYHSDTPYYPSG    306  

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