hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-11073694/chunk_1/iprscan-20080809-11073694.nocrc
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Query sequence: fh02524
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00880.8.fs Nebulin repeat                                 100.0    6.3e-27   3
PF00880.8.ls Nebulin repeat                                  99.7    7.8e-27   3
PF00018.18.fs SH3 domain                                      62.7    2.3e-16   1
PF00018.18.ls SH3 domain                                      64.6    2.9e-16   1
PF00412.12.fs LIM domain                                      42.4    1.2e-11   1
PF00412.12.ls LIM domain                                      44.4    3.6e-10   1
PF07653.7.fs Variant SH3 domain                              25.1    1.4e-06   1
PF07653.7.ls Variant SH3 domain                              26.9    6.8e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00412.12.fs   1/1      80   137 ..     1    61 []    42.4  1.2e-11
PF00412.12.ls   1/1      80   137 ..     1    61 []    44.4  3.6e-10
PF00880.8.ls   1/3     142   170 ..     1    29 []    41.9    2e-09
PF00880.8.fs   1/3     142   170 ..     1    29 []    39.9  4.8e-10
PF00880.8.ls   2/3     178   206 ..     1    29 []    46.4    9e-11
PF00880.8.fs   2/3     178   206 ..     1    29 []    44.4  2.7e-11
PF00018.18.fs   1/1     288   344 ..     1    59 []    62.7  2.3e-16
PF00018.18.ls   1/1     288   344 ..     1    59 []    64.6  2.9e-16
PF07653.7.fs   1/1     289   344 ..     1    69 []    25.1  1.4e-06
PF07653.7.ls   1/1     289   344 ..     1    69 []    26.9  6.8e-05

Alignments of top-scoring domains:
PF00412.12.fs: domain 1 of 1, from 80 to 137: score 42.4, E = 1.2e-11
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      Ca+Cgk +y++e+v + ldk+wH  CF C vC+  L++ + +   ++
     fh02524    80    CARCGKVVYPTEKV-NCLDKYWHKGCFHCEVCKMALNMNN-YKGYEK 124  

                   sklYCkhDyyklfg<-*
                    k+YC ++y k+ +   
     fh02524   125 -KPYCNAHYPKQSF    137  

PF00412.12.ls: domain 1 of 1, from 80 to 137: score 44.4, E = 3.6e-10
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      Ca+Cgk +y++e+v + ldk+wH  CF C vC+  L++ + +   ++
     fh02524    80    CARCGKVVYPTEKV-NCLDKYWHKGCFHCEVCKMALNMNN-YKGYEK 124  

                   sklYCkhDyyklfg<-*
                    k+YC ++y k+ +   
     fh02524   125 -KPYCNAHYPKQSF    137  

PF00880.8.ls: domain 1 of 3, from 142 to 170: score 41.9, E = 2e-09
                   *->DtPeivlAKknaklqSdvkYKedyEkeKg<-*
                      DtPe ++ K+ ++lqS+vkYK d+E++Kg   
     fh02524   142    DTPENLRLKQQSELQSQVKYKRDFEESKG    170  

PF00880.8.fs: domain 1 of 3, from 142 to 170: score 39.9, E = 4.8e-10
                   *->DtPeivlAKknaklqSdvkYKedyEkeKg<-*
                      DtPe ++ K+ ++lqS+vkYK d+E++Kg   
     fh02524   142    DTPENLRLKQQSELQSQVKYKRDFEESKG    170  

PF00880.8.ls: domain 2 of 3, from 178 to 206: score 46.4, E = 9e-11
                   *->DtPeivlAKknaklqSdvkYKedyEkeKg<-*
                      DtPe+++ K  ++++S vkY+ed+Ek+Kg   
     fh02524   178    DTPELQRLKRTQEQISNVKYHEDFEKTKG    206  

PF00880.8.fs: domain 2 of 3, from 178 to 206: score 44.4, E = 2.7e-11
                   *->DtPeivlAKknaklqSdvkYKedyEkeKg<-*
                      DtPe+++ K  ++++S vkY+ed+Ek+Kg   
     fh02524   178    DTPELQRLKRTQEQISNVKYHEDFEKTKG    206  

PF00018.18.fs: domain 1 of 1, from 288 to 344: score 62.7, E = 2.3e-16
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                      ++++A YDY a+++dE+sF+ GD i +++  dd gW +g +++tg +
     fh02524   288    RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDD-GWMYGTVQRTG-R 332  

                   eGliPsNYVepv<-*
                   +G+ P+NY+e v   
     fh02524   333 TGMLPANYIEFV    344  

PF00018.18.ls: domain 1 of 1, from 288 to 344: score 64.6, E = 2.9e-16
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                      ++++A YDY a+++dE+sF+ GD i +++  dd gW +g +++tg +
     fh02524   288    RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDD-GWMYGTVQRTG-R 332  

                   eGliPsNYVepv<-*
                   +G+ P+NY+e v   
     fh02524   333 TGMLPANYIEFV    344  

PF07653.7.fs: domain 1 of 1, from 289 to 344: score 25.1, E = 1.4e-06
                   *->ygraiedyvaAtdknenleeeeLslkkGd.vvkVidvggskdddgww
                       +ra+ dy a +d++e       s++ Gd +v V+       ddgw+
     fh02524   289    TYRAMYDYSA-QDEDE------VSFRDGDyIVNVQ-----PIDDGWM 323  

                   egeslgg..GrrrRGlvPssaveel<-*
                   +g++   ++Gr+  G  P++++e +   
     fh02524   324 YGTV--QrtGRT--GMLPANYIEFV    344  

PF07653.7.ls: domain 1 of 1, from 289 to 344: score 26.9, E = 6.8e-05
                   *->ygraiedyvaAtdknenleeeeLslkkGd.vvkVidvggskdddgww
                       +ra+ dy a +d++e       s++ Gd +v V+       ddgw+
     fh02524   289    TYRAMYDYSA-QDEDE------VSFRDGDyIVNVQ-----PIDDGWM 323  

                   egeslgg..GrrrRGlvPssaveel<-*
                   +g++   ++Gr+  G  P++++e +   
     fh02524   324 YGTV--QrtGRT--GMLPANYIEFV    344  

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