hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-11143753/chunk_1/iprscan-20080809-11143753.nocrc
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Query sequence: fh02544
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00867.9.ls XPG I-region                                   171.9    1.5e-48   1
PF00867.9.fs XPG I-region                                   170.1    5.3e-48   1
PF00752.8.fs XPG N-terminal domain                          122.7    2.4e-35   1
PF00752.8.ls XPG N-terminal domain                          101.7      2e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00752.8.ls   1/1     442   523 ..     1   111 []   101.7    2e-27
PF00752.8.fs   1/1     456   523 ..    37   111 .]   122.7  2.4e-35
PF00867.9.fs   1/1    1202  1290 ..     1   103 []   170.1  5.3e-48
PF00867.9.ls   1/1    1202  1290 ..     1   103 []   171.9  1.5e-48

Alignments of top-scoring domains:
PF00752.8.ls: domain 1 of 1, from 442 to 523: score 101.7, E = 2e-27
                   *->MGIkGLlpiLkpvapeairsvsiEalegYYkvLAiDasiwLyqfLka
                                + ++      ++ +  ++        +siwL+q+Lk+
     fh02544   442    ---------ASFHQ-----DSAWKKMSN--------ISIWLNQALKG 466  

                   vRdqlgnnlenEeGettshlmglfsRlcrLldfgIkPifVFDGgapndlK
                   vRd++gn++en      +hl++lf+Rlc+Ll+f+I+PifVFDG+ap  lK
     fh02544   467 VRDRHGNSIEN------PHLLTLFHRLCKLLFFRIRPIFVFDGDAP-LLK 509  

                   aetlqKRsarrqea<-*
                   ++tl+KR++r++ a   
     fh02544   510 KQTLVKRRQRKDLA    523  

PF00752.8.fs: domain 1 of 1, from 456 to 523: score 122.7, E = 2.4e-35
                   *->asiwLyqfLkavRdqlgnnlenEeGettshlmglfsRlcrLldfgIk
                      +siwL+q+Lk+vRd++gn++en      +hl++lf+Rlc+Ll+f+I+
     fh02544   456    ISIWLNQALKGVRDRHGNSIEN------PHLLTLFHRLCKLLFFRIR 496  

                   PifVFDGgapndlKaetlqKRsarrqea<-*
                   PifVFDG+ap  lK++tl+KR++r++ a   
     fh02544   497 PIFVFDGDAP-LLKKQTLVKRRQRKDLA    523  

PF00867.9.fs: domain 1 of 1, from 1202 to 1290: score 170.1, E = 5.3e-48
                   *->rlmGIpyIvAPigEAEAQcayLekkglvdgiiTeDsDvLLFGaprll
                      rl+GIpyI+AP +EAEAQca L+  ++++g+iT+DsD++LFGa++++
     fh02544  1202    RLFGIPYIQAP-MEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVY 1247 

                   rnLtdfGscLeiskekfklPveiidlekilkelgKKlsreqLidlaiLlG
                   rn++        +k+kf   ve++++ ++ ++lg  l+r++Li+la+LlG
     fh02544  1248 RNFF--------NKNKF---VEYYQYVDFHNQLG--LDRNKLINLAYLLG 1284 

                   cDYteG<-*
                   +DYteG   
     fh02544  1285 SDYTEG    1290 

PF00867.9.ls: domain 1 of 1, from 1202 to 1290: score 171.9, E = 1.5e-48
                   *->rlmGIpyIvAPigEAEAQcayLekkglvdgiiTeDsDvLLFGaprll
                      rl+GIpyI+AP +EAEAQca L+  ++++g+iT+DsD++LFGa++++
     fh02544  1202    RLFGIPYIQAP-MEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVY 1247 

                   rnLtdfGscLeiskekfklPveiidlekilkelgKKlsreqLidlaiLlG
                   rn++        +k+kf   ve++++ ++ ++lg  l+r++Li+la+LlG
     fh02544  1248 RNFF--------NKNKF---VEYYQYVDFHNQLG--LDRNKLINLAYLLG 1284 

                   cDYteG<-*
                   +DYteG   
     fh02544  1285 SDYTEG    1290 

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