hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-11143753/chunk_1/iprscan-20080809-11143753.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh02544
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00484                                                 124.6    1.1e-32   1
SM00485                                                  84.5    1.3e-20   1
SM00279                                                  52.6    5.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00485    1/1     440   523 ..     1   111 []    84.5  1.3e-20
SM00484    1/1    1202  1271 ..     1    80 []   124.6  1.1e-32
SM00279    1/1    1273  1306 ..     1    37 []    52.6  5.2e-11

Alignments of top-scoring domains:
SM00485: domain 1 of 1, from 440 to 523: score 84.5, E = 1.3e-20
                   *->MGikGLwkllkpvapsairevplealrGKtlAIDasiwLYqflkavr
                        ++   ++  ++a     + ++++         +siwL q+lk+vr
     fh02544   440    --FS--ASFHQDSA-----WKKMSN---------ISIWLNQALKGVR 468  

                   dklgtplpnskGeiTSHLqglfyRtcrLlefgIkPifVFDGkppPsnplK
                   d++g+ ++n+      HL +lf+R+c+Ll+f+I+PifVFDG++p    lK
     fh02544   469 DRHGNSIENP------HLLTLFHRLCKLLFFRIRPIFVFDGDAP---LLK 509  

                   kqtlakRrerRaea<-*
                   kqtl kRr+r+  a   
     fh02544   510 KQTLVKRRQRKDLA    523  

SM00484: domain 1 of 1, from 1202 to 1271: score 124.6, E = 1.1e-32
                   *->rlmGIpyivAPyEAEAQcAyLekkGlVdaiiteDsDlLlFGaprvyr
                      rl+GIpyi+AP+EAEAQcA L   ++++++it+DsD++lFGa++vyr
     fh02544  1202    RLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYR 1248 

                   nlftsgkrkqPgnyvkveieeidlesileeLgl<-*
                   n+f+++k        +ve++++   ++  +Lgl   
     fh02544  1249 NFFNKNK--------FVEYYQYV--DFHNQLGL    1271 

SM00279: domain 1 of 1, from 1273 to 1306: score 52.6, E = 5.2e-11
                   *->peqlidlaiLvGcDysdNipGVkGIGpktAlkLlref<-*
                      +++li+la L+G+Dy++   G++ +G++tA+++l+ef   
     fh02544  1273    RNKLINLAYLLGSDYTE---GIPTVGCVTAMEILNEF    1306 

//