hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-11143753/chunk_1/iprscan-20080809-11143753.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh02544 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR00600 rad2: DNA excision repair protein (rad2) 2245.9 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR00600 1/1 447 1454 .. 1 1127 [] 2245.9 0 Alignments of top-scoring domains: TIGR00600: domain 1 of 1, from 447 to 1454: score 2245.9, E = 0 *->MGVqGLWklLEcsgRpVklEtLEgKrLAVDiSIWlyQaLKaVRDreG + Wk iSIWl+QaLK+VRDr+G fh02544 447 ---DSAWKKMS------------------NISIWLNQALKGVRDRHG 472 NaikNsHlltlFrRlCKLLFFrIRPvFVFDGgAPlLKRQTlaKRrqRrdk N+i+N+HlltlF+RlCKLLFFrIRP+FVFDG+APlLK+QTl+KRrqR+d fh02544 473 NSIENPHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDL 522 asedArkTaeKLLalfLkrQAiktaenskkataealpSvqqvrrkessmt as+d+rkT+eKLL++fLkrQAikta++sk+ +ealpS++qvrr+ fh02544 523 ASSDSRKTTEKLLKTFLKRQAIKTAFRSKR--DEALPSLTQVRRE----- 565 LDnsEiKPvLnqRKnilKPeDlYvLPplpGvkyDKeeekhdseeesekew +DlYvLPpl+ eeekh+seee+ekew fh02544 566 -------------------NDLYVLPPLQ------EEEKHSSEEEDEKEW 590 eermnqkqklqeeffidpsaIDieSEeFsSLPpevKyeILtdmklftkrR +ermnqkq+lqeeff++p+aIDieSE+FsSLPpevK+eILtdmk+ftkrR fh02544 591 QERMNQKQALQEEFFHNPQAIDIESEDFSSLPPEVKHEILTDMKEFTKRR 640 rGlSkellEaMfenSmDFSryQlkgLlkkNdLnQklenvtkemnqqhSge r +l+EaM+e+S+DFS+yQlkgLlkkN+LnQ++e+v+kemnqqhSg+ fh02544 641 R----TLFEAMPEESDDFSQYQLKGLLKKNYLNQHIEHVQKEMNQQHSGH 686 iqrqyrveGgflKEvelrrvvSedtshyllikgIqGktaekevdsDDesl i+rqy++eGgflKEve+rrvvSedtshy+likgIq+kt ++evds esl fh02544 687 IRRQYEDEGGFLKEVESRRVVSEDTSHYILIKGIQAKT-VAEVDS--ESL 733 kssSsqldsnsedlksspaeklkpesesiveaeppsarTllakqaamsEs +s Ss+++++s+d+kssp+eklk+e+e+ +a+pps+rTlla+qaa+++s fh02544 734 PS-SSKMHGMSFDVKSSPCEKLKTEKEP--DATPPSPRTLLAMQAALLGS 780 ssedsdEseyerqekkrnnvavvddgslsprTlqaieqaLdddedGesnk sse+++Ese++rq+++rn++a+vd+gs+sprTl+ai++aLddded fh02544 781 SSEEELESENRRQARGRNAPAAVDEGSISPRTLSAIKRALDDDED----- 825 kkvsassddqtggekktkmlliSrieaEDddldylddgeeikleaalqlS +kv+a++d+qtgg+++++m+++S++e++D++l+++d g++i+++a+l++S fh02544 826 VKVCAGDDVQTGGPGAEEMRINSSTENSDEGLKVRD-GKGIPFTATLASS 874 svnskseavastkesLPnyarekTssgieepmAdhdLqGDnCavPkasqs svns++e+vast+e +re+T+s vPk+++s fh02544 875 SVNSAEEHVASTNE-----GREPTDS-----------------VPKEQMS 902 LlkgPsLGnvDkPiiatndskipsefqildrkkelslektvkpvssefgl L++ ++t++++i++e++i+drk++l+le++v+++s+++gl fh02544 903 LVH-----------VGTEAFPISDESMIKDRKDRLPLESAVVRHSDAPGL 941 psqresklaipteatdnlqgiedkpeqfelqNelspletknneSnlssDa p++re+++a+pt+ t++++++e+++e++e+qNel+p+e+k+++S+lssD+ fh02544 942 PNGRELTPASPTC-TNSVSKNETHAEVLEQQNELCPYESKFDSSLLSSDD 990 ekegspnsasevIGPVpeisslssVkvpsealdllettnlsnaeevknea e++++pnsasevIGPV++++++s+V+vpsea+d++e+++++na+e++n++ fh02544 991 ETKCKPNSASEVIGPVSLQETSSIVSVPSEAVDNVENVVSFNAKEHENFL 1040 EtGiqtkkvneSadleliskameveelessDeefvnEkEeSesDgkfiev Et iq+++++eSa+++lis++++ve++e+ ++EeSesDg+fiev fh02544 1041 ET-IQEQQTTESAGQDLISIPKAVEPMEI-------DSEESESDGSFIEV 1082 dsvlstlelqspslsqptdeseeaaenkvaaaegekrkPevvelllDesE +sv+s++elq++++++++++se+++e++v+++ege+++ e+++ll+D+sE fh02544 1083 QSVISDEELQAEFPETSKPPSEQGEEELVGTREGEAPA-ESESLLRDNSE 1131 edeivenmaEeekdaDdfknEwqdislEElealEafllaeqnslkakkqq +d+++++++E+ekda+d+++Ewqdi+lEEle+lE++lla+qnslka+kqq fh02544 1132 RDDVDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQ 1181 qkRiAaeVTgqMilEsQELLrLFGiPYIvAPMEAEAQCAiLdlldlvdGi q+RiAa+VTgqM+lEsQELLrLFGiPYI+APMEAEAQCAiLdl+d+++G+ fh02544 1182 QERIAATVTGQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGT 1231 ITDDSDvfLFGarhVYkNfFnqNKfVEyYqyeDihnqLGLDRnkLInLAy ITDDSD++LFGarhVY+NfFn+NKfVEyYqy+D+hnqLGLDRnkLInLAy fh02544 1232 ITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAY 1281 LLGSDYTeGlptVGpVsAmEILnEFPGdGLepLlkFkeWwheaQkdkksr LLGSDYTeG+ptVG+V+AmEILnEFPG+GLepLlkF+eWwheaQk++k+r fh02544 1282 LLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEWWHEAQKNPKIR 1331 enpndtkvKkklrllqnkIILtdeFPNPaVaeAYLrPvVDdSkgsFlWGk +np+dtkvKkklr+lq Lt++FPNPaVaeAYL+PvVDdSkgsFlWGk fh02544 1332 PNPHDTKVKKKLRTLQ----LTPGFPNPAVAEAYLKPVVDDSKGSFLWGK 1377 PDLDklReFcqryfGWnreKTDEvLlPVlkDvnklnaqqTQlRIdsFFrL PDLDk+ReFcqryfGWnr+KTDE+L+PVlk +l+aqqTQlRIdsFFrL fh02544 1378 PDLDKIREFCQRYFGWNRTKTDESLFPVLK---QLDAQQTQLRIDSFFRL 1424 aqqekydakviKsqrlkRavTamlrkekek<-* aqqek+dak+iKsqrl+RavT+mlrkeke+ fh02544 1425 AQQEKEDAKRIKSQRLNRAVTCMLRKEKEA 1454 //