hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20100614/iprscan-20100614-16031795/chunk_1/iprscan-20100614-16031795.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh02848 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00176.13.ls SNF2 family N-terminal domain 502.7 3.8e-148 1 PF00176.13.fs SNF2 family N-terminal domain 500.9 1.4e-147 1 PF07529.4.ls HSA 106.1 9.3e-29 1 PF07529.4.fs HSA 104.1 2.3e-28 1 PF07533.6.fs Associated with TFs and helicases 84.3 1.6e-23 1 PF07533.6.ls Associated with TFs and helicases 86.2 9.3e-23 1 PF00271.21.fs Helicase conserved C-terminal domain 68.3 2.5e-19 1 PF08880.1.fs QLQ 66.2 2.4e-18 1 PF08880.1.ls QLQ 68.2 2.4e-17 1 PF00271.21.ls Helicase conserved C-terminal domain 62.8 1e-15 1 PF04851.6.ls Type III restriction enzyme, res subunit 9.7 6.7e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08880.1.ls 1/1 128 164 .. 1 38 [] 68.2 2.4e-17 PF08880.1.fs 1/1 128 164 .. 1 38 [] 66.2 2.4e-18 PF07529.4.fs 1/1 418 490 .. 1 73 [] 104.1 2.3e-28 PF07529.4.ls 1/1 418 490 .. 1 73 [] 106.1 9.3e-29 PF07533.6.ls 1/1 570 614 .. 1 49 [] 86.2 9.3e-23 PF07533.6.fs 1/1 570 614 .. 1 49 [] 84.3 1.6e-23 PF04851.6.ls 1/1 709 873 .. 1 238 [] 9.7 6.7e-06 PF00176.13.fs 1/1 715 1010 .. 1 355 [] 500.9 1.4e-147 PF00176.13.ls 1/1 715 1010 .. 1 355 [] 502.7 3.8e-148 PF00271.21.fs 1/1 1073 1140 .. 1 64 [. 68.3 2.5e-19 PF00271.21.ls 1/1 1073 1147 .. 1 76 [] 62.8 1e-15 Alignments of top-scoring domains: PF08880.1.ls: domain 1 of 1, from 128 to 164: score 68.2, E = 2.4e-17 *->spFTpaQlqeLeaQilAYKyLargqGPVPpeLllaIfr<-* pF+++Ql++L+aQi+AYK+Largq P+P +L++a+++ fh02848 128 TPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAVQG 164 PF08880.1.fs: domain 1 of 1, from 128 to 164: score 66.2, E = 2.4e-18 *->spFTpaQlqeLeaQilAYKyLargqGPVPpeLllaIfr<-* pF+++Ql++L+aQi+AYK+Largq P+P +L++a+++ fh02848 128 TPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAVQG 164 PF07529.4.fs: domain 1 of 1, from 418 to 490: score 104.1, E = 2.3e-28 *->qkleeerRrKqhhdelLeemqwhakDFkeehKwklakakKmakavaq qk+e+er+r+q+h+e+L+++++hakDFke+h+ + k +K++kava+ fh02848 418 QKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVAT 464 YhqnkekeeqrreekeekqRlqkLaa<-* Yh+n+e+e+++++e++ek+R+++L+a fh02848 465 YHANTEREQKKENERIEKERMRRLMA 490 PF07529.4.ls: domain 1 of 1, from 418 to 490: score 106.1, E = 9.3e-29 *->qkleeerRrKqhhdelLeemqwhakDFkeehKwklakakKmakavaq qk+e+er+r+q+h+e+L+++++hakDFke+h+ + k +K++kava+ fh02848 418 QKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVAT 464 YhqnkekeeqrreekeekqRlqkLaa<-* Yh+n+e+e+++++e++ek+R+++L+a fh02848 465 YHANTEREQKKENERIEKERMRRLMA 490 PF07533.6.ls: domain 1 of 1, from 570 to 614: score 86.2, E = 9.3e-23 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr +++ +V+Vi+ ++Gk+LtG dAPka +Le+WLe+nPgy evaPr fh02848 570 MSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY----EVAPR 612 st<-* s+ fh02848 613 SD 614 PF07533.6.fs: domain 1 of 1, from 570 to 614: score 84.3, E = 1.6e-23 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr +++ +V+Vi+ ++Gk+LtG dAPka +Le+WLe+nPgy evaPr fh02848 570 MSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY----EVAPR 612 st<-* s+ fh02848 613 SD 614 PF04851.6.ls: domain 1 of 1, from 709 to 873: score 9.7, E = 6.7e-06 *->kiklRpyQeeAirrllesiekgelklaeglkdkdkkkrglivmATGs + +l +yQ+ ++ l+ ++++ +g+++ G fh02848 709 NGVLKQYQIKGLEWLVSLYNNN--------------LNGILADEMGL 741 GKTltaakiliarLlkkqq.klkkgridkvLFlVprkdLleQaleeFtkf GKT+ ++ li++L+++++ + ++L++Vp L a+ eF+k fh02848 742 GKTIQTIA-LITYLMEHKRiNG------PFLIIVPLSTLSNWAY-EFDKW 783 eskkkkef.knpgvdkklkvltdnqkdsadggkskkndikiifttiQkLs +++ +k++ k + ++ ++++ ++++++ +++++i++ + L fh02848 784 APSVVKVSyKGS--PAARRAFVPQLRSGKFNVLL--TTYEYIIKDKHILA 829 kalkeekendeeekskskeivvglrlapesleflldefdviIiDEaHrss k+ ++ ++I+DE Hr fh02848 830 KI----------------------------------RWKYMIVDEGHRMK 845 aktkskkrdedaeklavyrkileKWlkyfkpaflLGlTATPer<-* + +k ++l+ ++ ++ +L lT+TP fh02848 846 NHH-CK-----------LTQVLN---THYVAPRRLLLTGTPLQ 873 PF00176.13.fs: domain 1 of 1, from 715 to 1010: score 500.9, E = 1.4e-147 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQ++G++WL+sly+n +l+gILADEMGLGKT+QtI+l++y fh02848 715 YQIKGLEWLVSLYNN--------NLNGILADEMGLGKTIQTIALITY 753 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns l+e k ++ gpfL+++PlStl nW+ Ef kwap ++ v y+g++ + fh02848 754 LMEHKRIN----GPFLIIVPLSTLSNWAYEFDKWAP-SVVKVSYKGSPAA 798 rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin r ++ ++l+ g kf+vl+t+Ye+i+k dk L k i+ fh02848 799 R------RAFVPQLRSG---KFNVLLTTYEYIIK-----DKHILAK--IR 832 wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl w+y+i+DEG Hr+KN+++kl ++ l++++ a++RLlLTGTPlQN+L+El fh02848 833 WKYMIVDEG-HRMKNHHCKL--TQVLNTHYVAPRRLLLTGTPLQNKLPEL 879 wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr w+LlnFl+P iF s+ ++F++wfn p+a++ +++ fh02848 880 WALLNFLLPTIFKSC-------STFEQWFNAPFAMT------GEKV---- 912 ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels +++ee+ ++i+rLhk+l+pflLRRlKk+ve++Lp K+eyv++c +s fh02848 913 -DLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPE--KVEYVIKCDMS 959 klQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrKi +lQ+ lY+++ k+v +se k++++g ++l+n imqLrKi fh02848 960 ALQRVLYRHMQ---AKGVLLTDGSE---KDKKGKGGTKTLMNTIMQLRKI 1003 cNfHPyLf<-* cN HPy+f fh02848 1004 CN-HPYMF 1010 PF00176.13.ls: domain 1 of 1, from 715 to 1010: score 502.7, E = 3.8e-148 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQ++G++WL+sly+n +l+gILADEMGLGKT+QtI+l++y fh02848 715 YQIKGLEWLVSLYNN--------NLNGILADEMGLGKTIQTIALITY 753 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns l+e k ++ gpfL+++PlStl nW+ Ef kwap ++ v y+g++ + fh02848 754 LMEHKRIN----GPFLIIVPLSTLSNWAYEFDKWAP-SVVKVSYKGSPAA 798 rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin r ++ ++l+ g kf+vl+t+Ye+i+k dk L k i+ fh02848 799 R------RAFVPQLRSG---KFNVLLTTYEYIIK-----DKHILAK--IR 832 wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl w+y+i+DEG Hr+KN+++kl ++ l++++ a++RLlLTGTPlQN+L+El fh02848 833 WKYMIVDEG-HRMKNHHCKL--TQVLNTHYVAPRRLLLTGTPLQNKLPEL 879 wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr w+LlnFl+P iF s+ ++F++wfn p+a++ +++ fh02848 880 WALLNFLLPTIFKSC-------STFEQWFNAPFAMT------GEKV---- 912 ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels +++ee+ ++i+rLhk+l+pflLRRlKk+ve++Lp K+eyv++c +s fh02848 913 -DLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPE--KVEYVIKCDMS 959 klQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrKi +lQ+ lY+++ k+v +se k++++g ++l+n imqLrKi fh02848 960 ALQRVLYRHMQ---AKGVLLTDGSE---KDKKGKGGTKTLMNTIMQLRKI 1003 cNfHPyLf<-* cN HPy+f fh02848 1004 CN-HPYMF 1010 PF00271.21.fs: domain 1 of 1, from 1073 to 1140: score 68.3, E = 2.5e-19 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr ++ ++g+k++rl+G +++e+R +l+ F++ s+ +L++T+++g+ fh02848 1073 YFaYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSeyfIFLLSTRAGGL 1119 GiDipdvnlVInydlpwnpes<-* G++++ +++VI++d++wnp + fh02848 1120 GLNLQSADTVIIFDSDWNPHQ 1140 PF00271.21.ls: domain 1 of 1, from 1073 to 1147: score 62.8, E = 1e-15 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr ++ ++g+k++rl+G +++e+R +l+ F++ s+ +L++T+++g+ fh02848 1073 YFaYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSeyfIFLLSTRAGGL 1119 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* G++++ +++VI++d++wnp + aGRa fh02848 1120 GLNLQSADTVIIFDSDWNPHQVK-----AGRAP 1147 //