hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20100614/iprscan-20100614-16031795/chunk_1/iprscan-20100614-16031795.nocrc
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Query sequence: fh02848
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 142.1    5.9e-38   1
SM00573                                                 108.6      7e-28   1
SM00592                                                  85.9    4.9e-21   1
SM00490                                                  63.6    2.6e-14   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00573      1/1     418   490 ..     1    73 []   108.6    7e-28
SM00592      1/1     570   614 ..     1    50 []    85.9  4.9e-21
SM00487      1/1     708   900 ..     1   219 []   142.1  5.9e-38
SM00490      1/1    1068  1151 ..     1    86 []    63.6  2.6e-14

Alignments of top-scoring domains:
SM00573: domain 1 of 1, from 418 to 490: score 108.6, E = 7e-28
                   *->qkleeerRrKqhwdhlLeemiwhakDFkeerKwkiaaakKvakaVmd
                      qk+e+er+r+q+++++L+++++hakDFke+++    +++K+ kaV++
     fh02848   418    QKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVAT 464  

                   YhqnkekeeeReeekneknrlrkLae<-*
                   Yh+n+e+e+++e e++ek+r+r+L++   
     fh02848   465 YHANTEREQKKENERIEKERMRRLMA    490  

SM00592: domain 1 of 1, from 570 to 614: score 85.9, E = 4.9e-21
                   *->dgeeRVpVinketGkkLtGddAPkakdLerWLeenPeyvvDlgevaP
                      +++ +V+Vi+ e+Gk+LtG+dAPka +Le+WLe+nP+y     evaP
     fh02848   570    MSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY-----EVAP 611  

                   rsa<-*
                   rs+   
     fh02848   612 RSD    614  

SM00487: domain 1 of 1, from 708 to 900: score 142.1, E = 5.9e-38
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                       ++ l  yQ ++++wl++  +++ ++ila+++G+GKT+ ++++l+ +
     fh02848   708    VNgVLKQYQIKGLEWLVSLynnnLNGILADEMGLGKTI-QTIALITY 753  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                   l+++k+       ++++L++vP+ +L  +wa e+ k++ps         +
     fh02848   754 LMEHKR------INGPFLIIVPLSTL-SNWAYEFDKWAPS---------V 787  

                   vvglygG.sktke.keqlrklksgktdilvtTpgrLldll.ngkglsl.n
                   v + y G++  ++++    +l+sgk+++l+tT+++++++ +    l + +
     fh02848   788 VKVSYKGsP--AArRAFVPQLRSGKFNVLLTTYEYIIKDKhI---LAKiR 832  

                   ldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATppei
                   ++++i+DE+Hr++        ++ ++l+++l+  + +++rlll++Tp  +
     fh02848   833 WKYMIVDEGHRMK--------NHHCKLTqVLNTHYVAPRRLLLTGTP--L 872  

                   enllklflnlpelfpnpvfisvgf..tlepieqf<-*
                   +n l +++       ++ f+ +   +++  +eq+   
     fh02848   873 QNKLPELWA------LLNFLLPTIfkSCSTFEQW    900  

SM00490: domain 1 of 1, from 1068 to 1151: score 63.6, E = 2.6e-14
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki...kv
                       ++++++  +    g+k++rl+G +++e+R  +l+ F++  ++   +
     fh02848  1068    TIMEDYFAYR----GFKYLRLDGTTKAEDRGMLLKTFNEPGSeyfIF 1110 

                   LvaTdvaerGlDipgvdlVInydlpwspasyiQRiGRa.GRaG<-*
                   L++T+++++Gl+++ +d+VI++d +w+p +    +GRa+GR     
     fh02848  1111 LLSTRAGGLGLNLQSADTVIIFDSDWNPHQVK--AGRApGRGE    1151 

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