hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-11435032/chunk_1/iprscan-20080809-11435032.nocrc
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Query sequence: fh03042
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00536.20.fs SAM domain (Sterile alpha motif)                86.8    6.2e-25   3
PF00536.20.ls SAM domain (Sterile alpha motif)                74.7    2.8e-19   2
PF07647.7.fs SAM domain (Sterile alpha motif)                63.4    6.3e-18   3
PF07647.7.ls SAM domain (Sterile alpha motif)                56.1      1e-13   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.ls   1/3     369   438 ..     1    72 []     1.4     0.91
PF00536.20.ls   1/2     370   436 ..     1    65 []    17.8   0.0033
PF00536.20.ls   2/2     455   519 ..     1    65 []    56.8  6.4e-14
PF00536.20.fs   2/3     455   519 ..     1    65 []    54.9  1.6e-15
PF07647.7.ls   2/3     458   521 ..     1    72 []    20.7   0.0048
PF07647.7.fs   2/3     464   521 ..    11    72 .]    26.4  4.3e-07
PF07647.7.ls   3/3     542   614 ..     1    72 []    34.0  4.7e-07
PF07647.7.fs   3/3     542   614 ..     1    72 []    32.0  9.7e-09
PF00536.20.fs   3/3     543   570 ..     1    28 [.    16.1  0.00042

Alignments of top-scoring domains:
PF07647.7.ls: domain 1 of 3, from 369 to 438: score 1.4, E = 0.91
                   *->veswslesvaeWLe.siglegqYkdnFsdqgitglellllrlteedL
                        +w+ ++v  WLe  +g+ +    +  ++++ ++ ++   l+  + 
     fh03042   369    FAQWDGPTVVVWLElWVGM-PAWYVAACRANVKSGAIM-SALSDTEI 413  

                   aklalGitsvghRkkilkkiqelkqq<-*
                    + ++Gi+++ hR+k+  +iqe+      
     fh03042   414 -QREIGISNPLHRLKLRLAIQEIMSL    438  

PF00536.20.ls: domain 1 of 2, from 370 to 436: score 17.8, E = 0.0033
                   *->dgwsfesVgeWLesi.gl.gqYidnFlsagyidgdtllqlteeDLed
                       +w+  +V  WLe   g+++ Y+ +  +a+ ++g  ++ l++ ++++
     fh03042   370    AQWDGPTVVVWLELWvGMpAWYVAAC-RANVKSGAIMSALSDTEIQR 415  

                   .lGvtllGHrkKIlssIqgLk<-*
                   ++G+ ++ Hr+K+ ++Iq      
     fh03042   416 eIGISNPLHRLKLRLAIQEIM    436  

PF00536.20.ls: domain 2 of 2, from 455 to 519: score 56.8, E = 6.4e-14
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                      d ++ +   eWL s+gl+qY++ F +  ++d ++l +lt+ DL+ +l
     fh03042   455    DMNHEWIGNEWLPSLGLPQYRSYF-MECLVDARMLDHLTKKDLRGqL 500  

                   GvtllGHrkKIlssIqgLk<-*
                   +++   Hr   ++ I  L+   
     fh03042   501 KMVDSFHRNSFQCGIMCLR    519  

PF00536.20.fs: domain 2 of 3, from 455 to 519: score 54.9, E = 1.6e-15
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                      d ++ +   eWL s+gl+qY++ F +  ++d ++l +lt+ DL+ +l
     fh03042   455    DMNHEWIGNEWLPSLGLPQYRSYF-MECLVDARMLDHLTKKDLRGqL 500  

                   GvtllGHrkKIlssIqgLk<-*
                   +++   Hr   ++ I  L+   
     fh03042   501 KMVDSFHRNSFQCGIMCLR    519  

PF07647.7.ls: domain 2 of 3, from 458 to 521: score 20.7, E = 0.0048
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                       e   +    eWL s+gl +qY+ +F+++ ++  ++l  +lt  dL 
     fh03042   458    HEWIGN----EWLPSLGL-PQYRSYFMECLVDA-RML-DHLTKKDL- 496  

                   klalGitsvghRkkilkkiqelkqq<-*
                     +l++ +  hR+   ++i +l+     
     fh03042   497 RGQLKMVDSFHRNSFQCGIMCLRRL    521  

PF07647.7.fs: domain 2 of 3, from 464 to 521: score 26.4, E = 4.3e-07
                   *->eWLesiglegqYkdnFsdqgitglellllrlteedLaklalGitsvg
                      eWL s+gl +qY+ +F+++ ++  ++l  +lt  dL   +l++ +  
     fh03042   464    EWLPSLGL-PQYRSYFMECLVDA-RML-DHLTKKDL-RGQLKMVDSF 506  

                   hRkkilkkiqelkqq<-*
                   hR+   ++i +l+     
     fh03042   507 HRNSFQCGIMCLRRL    521  

PF07647.7.ls: domain 3 of 3, from 542 to 614: score 34.0, E = 4.7e-07
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v +ws+++v  W  sigl ++Y+ n+ + g++g+ l l++ ++ + L
     fh03042   542    VLVWSNDRVIRWILSIGL-KEYANNLIESGVHGALLALdETFDFSAL 587  

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a +l+++ ++++ R  + +++++l++    
     fh03042   588 AlLLQIPTQNTQARAVLEREFNNLLVM    614  

PF07647.7.fs: domain 3 of 3, from 542 to 614: score 32.0, E = 9.7e-09
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v +ws+++v  W  sigl ++Y+ n+ + g++g+ l l++ ++ + L
     fh03042   542    VLVWSNDRVIRWILSIGL-KEYANNLIESGVHGALLALdETFDFSAL 587  

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a +l+++ ++++ R  + +++++l++    
     fh03042   588 AlLLQIPTQNTQARAVLEREFNNLLVM    614  

PF00536.20.fs: domain 3 of 3, from 543 to 570: score 16.1, E = 0.00042
                   *->dgwsfesVgeWLesiglgqYidnFlsag<-*
                        ws + V  W+ sigl++Y++n +++g   
     fh03042   543    LVWSNDRVIRWILSIGLKEYANNLIESG    570  

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