hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-11435032/chunk_1/iprscan-20080809-11435032.nocrc
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Query sequence: fh03042
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00454                                                 113.2    2.9e-29   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00454    1/3     369   438 ..     1    67 []    38.6  8.2e-07
SM00454    2/3     454   521 ..     1    67 []    35.7  6.2e-06
SM00454    3/3     542   614 ..     1    67 []    38.9  6.9e-07

Alignments of top-scoring domains:
SM00454: domain 1 of 3, from 369 to 438: score 38.6, E = 8.2e-07
                   *->vs.wspesVaeWLesigleq..YadnFrkngidgeelllltseedLk
                      + +w+ ++V  WLe        Y+ + r+n  +g+++ +l++ e   
     fh03042   369    FAqWDGPTVVVWLELWVGMPawYVAACRANVKSGAIMSALSDTEIQR 415  

                   elGitllGhRkkIlsaiqklkeq<-*
                   e+Gi+++ hR+k+  aiq++ +    
     fh03042   416 EIGISNPLHRLKLRLAIQEIMSL    438  

SM00454: domain 2 of 3, from 454 to 521: score 35.7, E = 6.2e-06
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       + +++    eWL s+gl+qY++ F+++ +d ++l +lt  ++  +l
     fh03042   454    GDmNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRGQL 500  

                   GitllGhRkkIlsaiqklkeq<-*
                   ++ +  hR  ++++i +l+     
     fh03042   501 KMVDSFHRNSFQCGIMCLRRL    521  

SM00454: domain 3 of 3, from 542 to 614: score 38.9, E = 6.9e-07
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.....see
                      v  ws++ V++W+ sigl +Ya+n+++ g++g++l+l ++ + + ++
     fh03042   542    VLvWSNDRVIRWILSIGLKEYANNLIESGVHGALLALDEtfdfsALA 588  

                   dLkelGitllGhRkkIlsaiqklkeq<-*
                   +L+++  +++++R  + ++++ l+     
     fh03042   589 LLLQIPTQNTQARAVLEREFNNLLVM    614  

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