hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-16330711/chunk_1/iprscan-20090630-16330711.nocrc
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Query sequence: fh03522s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         126.4    7.5e-35   8
PF00096.16.fs Zinc finger, C2H2 type                         110.6    4.1e-30   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   1/8     412   434 ..     1    24 []    23.0    0.001
PF00096.16.fs   2/8     450   472 ..     1    24 []    30.1  2.9e-06
PF00096.16.ls   2/8     450   472 ..     1    24 []    32.1  1.8e-06

Alignments of top-scoring domains:
PF00096.16.ls: domain 1 of 8, from 412 to 434: score 23.0, E = 0.001
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C+  F+ k++L+rH++ H   
   fh03522s1   412    YPCT-KCNVNFREKKHLHRHMMYH    434  

PF00096.16.fs: domain 2 of 8, from 450 to 472: score 30.1, E = 2.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cg++F+++ +L +H+ +H   
   fh03522s1   450    YACR-ECGRTFRDRNSLLKHMIIH    472  

PF00096.16.ls: domain 2 of 8, from 450 to 472: score 32.1, E = 1.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cg++F+++ +L +H+ +H   
   fh03522s1   450    YACR-ECGRTFRDRNSLLKHMIIH    472  

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