hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-16330711/chunk_1/iprscan-20090630-16330711.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh03522s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 150.0    2.5e-40   8

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/8     412   434 ..     1    23 []    20.6     0.22
SM00355      2/8     450   472 ..     1    23 []    32.1  7.5e-05
SM00355      3/8     498   520 ..     1    23 []    17.2      2.3
SM00355      4/8     527   550 ..     1    23 []    14.4      7.4
SM00355      5/8     588   611 ..     1    23 []    20.3     0.27
SM00355      6/8     965   987 ..     1    23 []    18.1      1.2
SM00355      7/8    1040  1062 ..     1    23 []    21.0     0.16
SM00355      8/8    1263  1289 ..     1    23 []     6.2       63

Alignments of top-scoring domains:
SM00355: domain 1 of 8, from 412 to 434: score 20.6, E = 0.22
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C+  f+ k++L rHm+ H   
   fh03522s1   412    YPCTK-CNVNFREKkHLHRHMMYH    434  

SM00355: domain 2 of 8, from 450 to 472: score 32.1, E = 7.5e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + Cg++f+++++L +Hm +H   
   fh03522s1   450    YACRE-CGRTFRDRnSLLKHMIIH    472  

SM00355: domain 3 of 8, from 498 to 520: score 17.2, E = 2.3
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C + ++ ++ +++H ++H   
   fh03522s1   498    LQCPQ-CVFGTNCPkTFVQHAKTH    520  

SM00355: domain 4 of 8, from 527 to 550: score 14.4, E = 7.4
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C++   ++++L+ H    H   
   fh03522s1   527    YCCEE-CNFMAVTEnELECHRGiAH    550  

SM00355: domain 5 of 8, from 588 to 611: score 20.3, E = 0.27
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C++++s k+ Lk+H    H   
   fh03522s1   588    YICKM-CPFTTSAKsVLKKHTEyLH    611  

SM00355: domain 6 of 8, from 965 to 987: score 18.1, E = 1.2
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        Cp+ C+ +f +   L +H+r H   
   fh03522s1   965    KSCPY-CPATFETGvGLSNHVRGH    987  

SM00355: domain 7 of 8, from 1040 to 1062: score 21.0, E = 0.16
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg  f +k  L +H+r H   
   fh03522s1  1040    HTCQL-CGGWFDTKiGLSNHVRGH    1062 

SM00355: domain 8 of 8, from 1263 to 1289: score 6.2, E = 63
                   *->ykCpigCgksfssk.aLkr....HmrvH<-*
                      ++C + Cg +f+ + + +++  +H+++H   
   fh03522s1  1263    LRCRF-CGLVFRGPlSVQEdwikHLQRH    1289 

//