hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-11564176/chunk_1/iprscan-20080809-11564176.nocrc
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Query sequence: fh03701
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF04707.4.fs MSF1-like conserved region                  277.1    1.3e-81   1
PF04707.4.ls MSF1-like conserved region                  279.0    8.3e-81   1
PF00650.10.fs CRAL/TRIO domain                            157.5    3.8e-46   1
PF00650.10.ls CRAL/TRIO domain                            159.5    8.2e-45   1
PF03765.5.fs CRAL/TRIO, N-terminus                        49.3    2.2e-14   1
PF03765.5.ls CRAL/TRIO, N-terminus                        51.1    3.5e-12   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF04707.4.fs   1/1      25   181 ..     1   164 []   277.1  1.3e-81
PF04707.4.ls   1/1      25   181 ..     1   164 []   279.0  8.3e-81
PF03765.5.fs   1/1     254   321 ..     1    89 []    49.3  2.2e-14
PF03765.5.ls   1/1     254   321 ..     1    89 []    51.1  3.5e-12
PF00650.10.ls   1/1     336   518 ..     1   188 []   159.5  8.2e-45
PF00650.10.fs   1/1     336   518 ..     1   188 []   157.5  3.8e-46

Alignments of top-scoring domains:
PF04707.4.fs: domain 1 of 1, from 25 to 181: score 277.1, E = 1.3e-81
                   *->eqVtaAfwrrYPNCPysphVisvDVleRkvddedGkVLhT.eRlltk
                      e+++aA++rr+P+CP++p+++++D++++ +++ dG+ +h+ eR++++
     fh03701    25    ELIMAAYERRFPTCPLIPMFVGSDTVNEFKSE-DGA-IHViERRCKL 69   

                   qgrlPrWlkkVligvadtvYvlEeSvvDpkkrtLtleTrNltfssrlsVd
                   ++++Pr+lkk ++g +d+vY++++++++ ++rtL++e+ N+tfs+r+ ++
     fh03701    70 DVDAPRLLKK-IAG-VDYVYFVQKNSLNSRERTLHIEAYNETFSNRVIIN 117  

                   ErctYtpHpeNpsnwTvfkQeAsissvkgslfglsskvEkwslkrFseNa
                   E+c+Yt+HpeN+ +wT+f+Q+As++ +k+ +fg++s vEk+++k++++N+
     fh03701   118 EHCCYTVHPENE-DWTCFEQSASLD-IKS-FFGFESTVEKIAMKQYTSNI 164  

                   kKGreGlEyvleefleee<-*
                   kKG+e++Ey+l++ leee   
     fh03701   165 KKGKEIIEYYLRQ-LEEE    181  

PF04707.4.ls: domain 1 of 1, from 25 to 181: score 279.0, E = 8.3e-81
                   *->eqVtaAfwrrYPNCPysphVisvDVleRkvddedGkVLhT.eRlltk
                      e+++aA++rr+P+CP++p+++++D++++ +++ dG+ +h+ eR++++
     fh03701    25    ELIMAAYERRFPTCPLIPMFVGSDTVNEFKSE-DGA-IHViERRCKL 69   

                   qgrlPrWlkkVligvadtvYvlEeSvvDpkkrtLtleTrNltfssrlsVd
                   ++++Pr+lkk ++g +d+vY++++++++ ++rtL++e+ N+tfs+r+ ++
     fh03701    70 DVDAPRLLKK-IAG-VDYVYFVQKNSLNSRERTLHIEAYNETFSNRVIIN 117  

                   ErctYtpHpeNpsnwTvfkQeAsissvkgslfglsskvEkwslkrFseNa
                   E+c+Yt+HpeN+ +wT+f+Q+As++ +k+ +fg++s vEk+++k++++N+
     fh03701   118 EHCCYTVHPENE-DWTCFEQSASLD-IKS-FFGFESTVEKIAMKQYTSNI 164  

                   kKGreGlEyvleefleee<-*
                   kKG+e++Ey+l++ leee   
     fh03701   165 KKGKEIIEYYLRQ-LEEE    181  

PF03765.5.fs: domain 1 of 1, from 254 to 321: score 49.3, E = 2.2e-14
                   *->gtpgnltpeqeraykskLkeetLkelryelseknkteeldkgykerl
                      +++g ltp         L+e+ L +lr+ l+           +k+++
     fh03701   254    RYLGDLTP---------LQESCLIRLRQWLQ---------ETHKGKI 282  

                   kawldDatlLRFLRARKFdvaaAiemltktlkWRrEfGvnei<-*
                      + D++ LRFLRAR+F++++A e    +l WR+++ v+ i   
     fh03701   283 ---PKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYI    321  

PF03765.5.ls: domain 1 of 1, from 254 to 321: score 51.1, E = 3.5e-12
                   *->gtpgnltpeqeraykskLkeetLkelryelseknkteeldkgykerl
                      +++g ltp         L+e+ L +lr+ l+           +k+++
     fh03701   254    RYLGDLTP---------LQESCLIRLRQWLQ---------ETHKGKI 282  

                   kawldDatlLRFLRARKFdvaaAiemltktlkWRrEfGvnei<-*
                      + D++ LRFLRAR+F++++A e    +l WR+++ v+ i   
     fh03701   283 ---PKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYI    321  

PF00650.10.ls: domain 1 of 1, from 336 to 518: score 159.5, E = 8.2e-45
                   *->pqfihgtdkdGrpvylekrGklntkvmlkittlhrmlkklvyeverl
                       + +h++dkdGrp+y++++G+ +tk++ + +  ++ l   v+++ + 
     fh03701   336    AGGWHHHDKDGRPLYVLRLGQMDTKGLVR-ALGEEALLRYVLSINEE 381  

                   tlyrlpaasrklgtlingsctvfDlkGvsmssmaspvlsvlkkvinilqd
                    l r ++ +  +g +i++++  +Dl+G++m+++++p++  l+ +i+++++
     fh03701   382 GLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEA 431  

                   yYPErlgkfylinaPwlFstvyklIKpFLDektrsKifvlGss.Ykee..
                   +YPE+lg++++ +aP++F+++++l++pF+D+ tr K+ ++ +++Y+++++
     fh03701   432 NYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNdYQGPgg 481  

                   LlkhipaenLPakfGGtlktkydkcgvwlsdvgpwrdeeqigfe<-*
                   Ll +i++e++P+++ G++        +++++ g +++  ++ +e   
     fh03701   482 LLDYIDKEIIPDFLSGECM-------CEVPEGGLVPKSLYRTAE    518  

PF00650.10.fs: domain 1 of 1, from 336 to 518: score 157.5, E = 3.8e-46
                   *->pqfihgtdkdGrpvylekrGklntkvmlkittlhrmlkklvyeverl
                       + +h++dkdGrp+y++++G+ +tk++ + +  ++ l   v+++ + 
     fh03701   336    AGGWHHHDKDGRPLYVLRLGQMDTKGLVR-ALGEEALLRYVLSINEE 381  

                   tlyrlpaasrklgtlingsctvfDlkGvsmssmaspvlsvlkkvinilqd
                    l r ++ +  +g +i++++  +Dl+G++m+++++p++  l+ +i+++++
     fh03701   382 GLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEA 431  

                   yYPErlgkfylinaPwlFstvyklIKpFLDektrsKifvlGss.Ykee..
                   +YPE+lg++++ +aP++F+++++l++pF+D+ tr K+ ++ +++Y+++++
     fh03701   432 NYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNdYQGPgg 481  

                   LlkhipaenLPakfGGtlktkydkcgvwlsdvgpwrdeeqigfe<-*
                   Ll +i++e++P+++ G++        +++++ g +++  ++ +e   
     fh03701   482 LLDYIDKEIIPDFLSGECM-------CEVPEGGLVPKSLYRTAE    518  

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