# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh03725.fasta.nr -Q fh03725.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh03725, 433 aa vs /cdna2/lib/nr/nr library 2779448989 residues in 8089198 sequences statistics sampled from 60000 to 8087818 sequences Expectation_n fit: rho(ln(x))= 5.2521+/-0.000189; mu= 11.9823+/- 0.011 mean_var=91.5564+/-17.757, 0's: 38 Z-trim: 43 B-trim: 105 in 1/66 Lambda= 0.134039 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8089198) gi|74752630|sp|Q9H400.1|LIME1_HUMAN RecName: Full= ( 295) 2015 399.4 6.2e-109 gi|7020485|dbj|BAA91148.1| unnamed protein product ( 295) 2006 397.6 2.1e-108 gi|37782468|gb|AAP34480.1| LP8067 [Homo sapiens] ( 200) 1361 272.7 5.6e-71 gi|109091333|ref|XP_001113808.1| PREDICTED: simila ( 699) 1252 252.2 3e-64 gi|56203831|emb|CAI21882.1| novel protein [Homo sa ( 107) 742 152.8 3.9e-35 gi|119595625|gb|EAW75219.1| Lck interacting transm ( 104) 726 149.6 3.3e-34 gi|81906250|sp|Q9EQR5.1|LIME1_MOUSE RecName: Full= ( 269) 654 136.1 9.9e-30 gi|149033939|gb|EDL88722.1| similar to Lck-interac ( 269) 637 132.8 9.6e-29 gi|123235118|emb|CAM26427.1| Lck interacting trans ( 248) 537 113.5 6e-23 gi|123235117|emb|CAM26426.1| Lck interacting trans ( 188) 527 111.4 1.9e-22 gi|194224655|ref|XP_001493004.2| PREDICTED: simila ( 338) 523 110.9 4.9e-22 gi|194672298|ref|XP_001788100.1| PREDICTED: simila ( 203) 475 101.4 2.1e-19 gi|74196734|dbj|BAE43105.1| unnamed protein produc ( 218) 472 100.8 3.3e-19 gi|149033938|gb|EDL88721.1| similar to Lck-interac ( 222) 451 96.8 5.7e-18 gi|73992757|ref|XP_543104.2| PREDICTED: similar to ( 652) 406 88.6 5e-15 gi|123235119|emb|CAM26428.1| Lck interacting trans ( 87) 364 79.6 3.4e-13 gi|149636082|ref|XP_001508204.1| PREDICTED: simila (1218) 342 76.4 4.2e-11 gi|55732042|emb|CAH92728.1| hypothetical protein [ ( 46) 324 71.6 4.6e-11 gi|126302983|ref|XP_001375884.1| PREDICTED: simila ( 456) 288 65.6 2.9e-08 gi|118105593|ref|XP_423076.2| PREDICTED: similar t ( 341) 195 47.5 0.0061 >>gi|74752630|sp|Q9H400.1|LIME1_HUMAN RecName: Full=Lck- (295 aa) initn: 2015 init1: 2015 opt: 2015 Z-score: 2112.1 bits: 399.4 E(): 6.2e-109 Smith-Waterman score: 2015; 100.000% identity (100.000% similar) in 295 aa overlap (139-433:1-295) 110 120 130 140 150 160 fh0372 CRFGAARWRQVPLASPQRPFLLSPGPRLHRMGLPVSWAPPALWVLGCCALLLSLWALCTA :::::::::::::::::::::::::::::: gi|747 MGLPVSWAPPALWVLGCCALLLSLWALCTA 10 20 30 170 180 190 200 210 220 fh0372 CRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 CRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRA 40 50 60 70 80 90 230 240 250 260 270 280 fh0372 LRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 LRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGL 100 110 120 130 140 150 290 300 310 320 330 340 fh0372 AALPGVSLAASPVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 AALPGVSLAASPVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRD 160 170 180 190 200 210 350 360 370 380 390 400 fh0372 PGPTTDPLDPKGQGAILALAGDLAYQTLPLRALDVDSGPLENVYESIRELGDPAGRSSTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 PGPTTDPLDPKGQGAILALAGDLAYQTLPLRALDVDSGPLENVYESIRELGDPAGRSSTC 220 230 240 250 260 270 410 420 430 fh0372 GAGTPPASSCPSLGRGWRPLPASLP ::::::::::::::::::::::::: gi|747 GAGTPPASSCPSLGRGWRPLPASLP 280 290 >>gi|7020485|dbj|BAA91148.1| unnamed protein product [Ho (295 aa) initn: 2006 init1: 2006 opt: 2006 Z-score: 2102.7 bits: 397.6 E(): 2.1e-108 Smith-Waterman score: 2006; 99.661% identity (99.661% similar) in 295 aa overlap (139-433:1-295) 110 120 130 140 150 160 fh0372 CRFGAARWRQVPLASPQRPFLLSPGPRLHRMGLPVSWAPPALWVLGCCALLLSLWALCTA :::::::::::::::::::::::::::::: gi|702 MGLPVSWAPPALWVLGCCALLLSLWALCTA 10 20 30 170 180 190 200 210 220 fh0372 CRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|702 CRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRA 40 50 60 70 80 90 230 240 250 260 270 280 fh0372 LRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|702 LRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGL 100 110 120 130 140 150 290 300 310 320 330 340 fh0372 AALPGVSLAASPVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|702 AALPGVSLAASPVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRD 160 170 180 190 200 210 350 360 370 380 390 400 fh0372 PGPTTDPLDPKGQGAILALAGDLAYQTLPLRALDVDSGPLENVYESIRELGDPAGRSSTC ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|702 PGPTTDPLDPKGQGAILALAGDLAYQTLPLRALDVGSGPLENVYESIRELGDPAGRSSTC 220 230 240 250 260 270 410 420 430 fh0372 GAGTPPASSCPSLGRGWRPLPASLP ::::::::::::::::::::::::: gi|702 GAGTPPASSCPSLGRGWRPLPASLP 280 290 >>gi|37782468|gb|AAP34480.1| LP8067 [Homo sapiens] g (200 aa) initn: 1361 init1: 1361 opt: 1361 Z-score: 1430.8 bits: 272.7 E(): 5.6e-71 Smith-Waterman score: 1361; 100.000% identity (100.000% similar) in 200 aa overlap (234-433:1-200) 210 220 230 240 250 260 fh0372 THLCSLSKSDTRLHELHRGPRSSRALRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQEL :::::::::::::::::::::::::::::: gi|377 MDLLRPHWLEVSRDITGPQAAPSAFPHQEL 10 20 30 270 280 290 300 310 320 fh0372 PRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGTHRSPQEPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|377 PRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGTHRSPQEPQQ 40 50 60 70 80 90 330 340 350 360 370 380 fh0372 GKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDLAYQTLPLRALDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|377 GKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDLAYQTLPLRALDV 100 110 120 130 140 150 390 400 410 420 430 fh0372 DSGPLENVYESIRELGDPAGRSSTCGAGTPPASSCPSLGRGWRPLPASLP :::::::::::::::::::::::::::::::::::::::::::::::::: gi|377 DSGPLENVYESIRELGDPAGRSSTCGAGTPPASSCPSLGRGWRPLPASLP 160 170 180 190 200 >>gi|109091333|ref|XP_001113808.1| PREDICTED: similar to (699 aa) initn: 1288 init1: 1236 opt: 1252 Z-score: 1310.0 bits: 252.2 E(): 3e-64 Smith-Waterman score: 1252; 76.226% identity (82.642% similar) in 265 aa overlap (168-430:416-676) 140 150 160 170 180 190 fh0372 RMGLPVSWAPPALWVLGCCALLLSLWALCTACRRPEDAVAPRKRARRQRA-RLQGSATAA : :: .: : :.: . :: . gi|109 GRPPPRNVFDFLNEKLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKI 390 400 410 420 430 440 200 210 220 230 240 250 fh0372 EASLLR-RTHLCSLSKSDTRLHELHRGPRSSRALRPASMDLLRPHWLEVSRDITGPQAAP : . :. .:... : : : ::::::::::::::::::::::::::: gi|109 ERTQRDIRSIQEALTRNAGRYSALTPPP----ALRPASMDLLRPHWLEVSRDITGPQAAL 450 460 470 480 490 500 260 270 280 290 300 310 fh0372 SAFPHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGTH :::: :::: ::::::::: ::: :::::::::::::::::::::::::::::::::::. gi|109 SAFPLQELPWALPAAAATARCAGPEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGTQ 510 520 530 540 550 560 320 330 340 350 360 370 fh0372 RSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDLAYQT ::::::: ::.::::::::::::::::::::::::::::::.:::::::::::.:::: : gi|109 RSPQEPQLGKAEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLNPKGQGAILALASDLAYAT 570 580 590 600 610 620 380 390 400 410 420 430 fh0372 LPLRALDVDSGPLENVYESIRELGDPAGRSSTCGAGTPPASSCPSLGRGWRPLPASLP :::::::.::.:::::::::::::: ::::::::. ::::::::::::::::::: gi|109 LPLRALDADSSPLENVYESIRELGDSAGRSSTCGTRTPPASSCPSLGRGWRPLPAPNTQG 630 640 650 660 670 680 gi|109 LALRPPERPVPRPAPPHS 690 >>gi|56203831|emb|CAI21882.1| novel protein [Homo sapien (107 aa) initn: 742 init1: 742 opt: 742 Z-score: 787.3 bits: 152.8 E(): 3.9e-35 Smith-Waterman score: 742; 100.000% identity (100.000% similar) in 107 aa overlap (139-245:1-107) 110 120 130 140 150 160 fh0372 CRFGAARWRQVPLASPQRPFLLSPGPRLHRMGLPVSWAPPALWVLGCCALLLSLWALCTA :::::::::::::::::::::::::::::: gi|562 MGLPVSWAPPALWVLGCCALLLSLWALCTA 10 20 30 170 180 190 200 210 220 fh0372 CRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 CRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRA 40 50 60 70 80 90 230 240 250 260 270 280 fh0372 LRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGL ::::::::::::::::: gi|562 LRPASMDLLRPHWLEVS 100 >>gi|119595625|gb|EAW75219.1| Lck interacting transmembr (104 aa) initn: 726 init1: 726 opt: 726 Z-score: 770.7 bits: 149.6 E(): 3.3e-34 Smith-Waterman score: 726; 100.000% identity (100.000% similar) in 104 aa overlap (139-242:1-104) 110 120 130 140 150 160 fh0372 CRFGAARWRQVPLASPQRPFLLSPGPRLHRMGLPVSWAPPALWVLGCCALLLSLWALCTA :::::::::::::::::::::::::::::: gi|119 MGLPVSWAPPALWVLGCCALLLSLWALCTA 10 20 30 170 180 190 200 210 220 fh0372 CRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRA 40 50 60 70 80 90 230 240 250 260 270 280 fh0372 LRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGL :::::::::::::: gi|119 LRPASMDLLRPHWL 100 >>gi|81906250|sp|Q9EQR5.1|LIME1_MOUSE RecName: Full=Lck- (269 aa) initn: 853 init1: 527 opt: 654 Z-score: 690.3 bits: 136.1 E(): 9.9e-30 Smith-Waterman score: 965; 60.219% identity (75.547% similar) in 274 aa overlap (142-399:4-268) 120 130 140 150 160 170 fh0372 GAARWRQVPLASPQRPFLLSPGPRLHRMGLPVSWAPPALWVLGCCALLLSLWALCTACRR :: :: ::::::: .::: ::::::::.: gi|819 MRPPVPSAPLALWVLGCFSLLLWLWALCTACHR 10 20 30 180 190 200 210 220 230 fh0372 PEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRALRP :::.::.. :: : . .: :::.::::::::::::::::::::::: : :: gi|819 --------KRAQRQQTGLQDSLVPVEMPLLRQTHLCSLSKSDTRLHELHRGPRSSIAPRP 40 50 60 70 80 240 250 260 270 280 290 fh0372 ASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGLAAL ::::::.:.:::.:: : :. :::: ..:::: ::: ::: .. :::::::::::. gi|819 ASMDLLHPRWLEMSRGSTRSQVPNSAFPPRQLPRAPPAAPATAPSTSSEATYSNVGLAAI 90 100 110 120 130 140 300 310 320 330 fh0372 PGVSLAASPVV----------------AEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVD : .:::::::: :::: .::.:::... :: :: :..: ::.:.: gi|819 PRASLAASPVVWAGTQLTISCARLGPGAEYACIQKHKGTEQGCQELQQ-KAKVIPATQMD 150 160 170 180 190 200 340 350 360 370 380 390 fh0372 VLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDLAYQTLPLRALDVDSGPLENVYESI :::::::::::::: :.:: :. . . : :..:. :... ::. :. .:::::::::: gi|819 VLYSRVCKPKRRDPRPVTDQLNLQDGRTSLPLGSDVEYEAINLRGQDMKQGPLENVYESI 210 220 230 240 250 260 400 410 420 430 fh0372 RELGDPAGRSSTCGAGTPPASSCPSLGRGWRPLPASLP .:.: gi|819 KEMGL >>gi|149033939|gb|EDL88722.1| similar to Lck-interacting (269 aa) initn: 852 init1: 510 opt: 637 Z-score: 672.5 bits: 132.8 E(): 9.6e-29 Smith-Waterman score: 960; 59.854% identity (75.547% similar) in 274 aa overlap (142-399:4-268) 120 130 140 150 160 170 fh0372 GAARWRQVPLASPQRPFLLSPGPRLHRMGLPVSWAPPALWVLGCCALLLSLWALCTACRR :: :: ::::::: .::: ::::::::.: gi|149 MRPPVPSAPLALWVLGCFSLLLWLWALCTACHR 10 20 30 180 190 200 210 220 230 fh0372 PEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRALRP :::.::.. :::: .:. :::..:::::::::::::::::: ::. : :: gi|149 --------KRAQRQQTGLQGSLMPVEVPLLRQAHLCSLSKSDTRLHELHRGQRSTIAPRP 40 50 60 70 80 240 250 260 270 280 290 fh0372 ASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGLAAL ::::::.:.:::.:: : :. :::: ..:::: ::: :: .. :::::::::::. gi|149 ASMDLLHPRWLELSRGSTRSQVPNSAFPPRQLPRAPPAAPATPPSTSPEATYSNVGLAAI 90 100 110 120 130 140 300 310 320 330 fh0372 PGVSLAASPVV----------------AEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVD : .:::::::: :::: .::.:::... :: :: :..::::.:.: gi|149 PRASLAASPVVWPGRQLTISCTRLGPGAEYACIQKHKGTEQGCQESQQ-KAKVTPATQMD 150 160 170 180 190 200 340 350 360 370 380 390 fh0372 VLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDLAYQTLPLRALDVDSGPLENVYESI :::::::::::::: : :: :. . .::::..:. :... ::. :. .: :::::::: gi|149 VLYSRVCKPKRRDPRPDTDQLNLQDGRTILALGNDVKYEAITLRGQDMKQGTLENVYESI 210 220 230 240 250 260 400 410 420 430 fh0372 RELGDPAGRSSTCGAGTPPASSCPSLGRGWRPLPASLP .:.: gi|149 KEMGL >>gi|123235118|emb|CAM26427.1| Lck interacting transmemb (248 aa) initn: 863 init1: 537 opt: 537 Z-score: 568.4 bits: 113.5 E(): 6e-23 Smith-Waterman score: 848; 60.504% identity (77.311% similar) in 238 aa overlap (178-399:11-247) 150 160 170 180 190 200 fh0372 PALWVLGCCALLLSLWALCTACRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLC :::::.::.. :: : . .: :::.:::: gi|123 RQGQAANPRWPRKRAQRQQTGLQDSLVPVEMPLLRQTHLC 10 20 30 40 210 220 230 240 250 260 fh0372 SLSKSDTRLHELHRGPRSSRALRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRAL ::::::::::::::::::: : ::::::::.:.:::.:: : :. :::: ..:::: gi|123 SLSKSDTRLHELHRGPRSSIAPRPASMDLLHPRWLEMSRGSTRSQVPNSAFPPRQLPRAP 50 60 70 80 90 100 270 280 290 300 310 fh0372 PAAAATAGCAGLEATYSNVGLAALPGVSLAASPVV----------------AEYARVQKR ::: ::: .. :::::::::::.: .:::::::: :::: .::. gi|123 PAAPATAPSTSSEATYSNVGLAAIPRASLAASPVVWAGTQLTISCARLGPGAEYACIQKH 110 120 130 140 150 160 320 330 340 350 360 370 fh0372 KGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDL :::... :: :: :..: ::.:.::::::::::::::: :.:: :. . . : :..:. gi|123 KGTEQGCQELQQ-KAKVIPATQMDVLYSRVCKPKRRDPRPVTDQLNLQDGRTSLPLGSDV 170 180 190 200 210 380 390 400 410 420 430 fh0372 AYQTLPLRALDVDSGPLENVYESIRELGDPAGRSSTCGAGTPPASSCPSLGRGWRPLPAS :... ::. :. .::::::::::.:.: gi|123 EYEAINLRGQDMKQGPLENVYESIKEMGL 220 230 240 >>gi|123235117|emb|CAM26426.1| Lck interacting transmemb (188 aa) initn: 570 init1: 527 opt: 527 Z-score: 559.5 bits: 111.4 E(): 1.9e-22 Smith-Waterman score: 542; 62.338% identity (75.325% similar) in 154 aa overlap (179-316:34-187) 150 160 170 180 190 200 fh0372 ALWVLGCCALLLSLWALCTACRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCS ::::.::.. :: : . .: :::.::::: gi|123 SLQLFQTEEKIERTQRDIRGIQEALTRNTGRKRAQRQQTGLQDSLVPVEMPLLRQTHLCS 10 20 30 40 50 60 210 220 230 240 250 260 fh0372 LSKSDTRLHELHRGPRSSRALRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRALP :::::::::::::::::: : ::::::::.:.:::.:: : :. :::: ..:::: : gi|123 LSKSDTRLHELHRGPRSSIAPRPASMDLLHPRWLEMSRGSTRSQVPNSAFPPRQLPRAPP 70 80 90 100 110 120 270 280 290 300 310 fh0372 AAAATAGCAGLEATYSNVGLAALPGVSLAASPVV----------------AEYARVQKRK :: ::: .. :::::::::::.: .:::::::: :::: .::.: gi|123 AAPATAPSTSSEATYSNVGLAAIPRASLAASPVVWAGTQLTISCARLGPGAEYACIQKHK 130 140 150 160 170 180 320 330 340 350 360 370 fh0372 GTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDLA ::.. gi|123 GTEQG 433 residues in 1 query sequences 2779448989 residues in 8089198 library sequences Tcomplib [34.26] (8 proc) start: Thu Apr 16 13:52:35 2009 done: Thu Apr 16 13:55:26 2009 Total Scan time: 999.900 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]