hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-12033584/chunk_1/iprscan-20080809-12033584.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh03862 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 320.1 3.6e-93 1 PF00069.15.fs Protein kinase domain 318.2 1.3e-92 1 PF07714.7.fs Protein tyrosine kinase 144.3 8.7e-42 1 PF07714.7.ls Protein tyrosine kinase 146.2 8.2e-41 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 54 305 .. 1 287 [] 318.2 1.3e-92 PF07714.7.fs 1/1 54 305 .. 1 272 [] 144.3 8.7e-42 PF00069.15.ls 1/1 54 305 .. 1 287 [] 320.1 3.6e-93 PF07714.7.ls 1/1 54 305 .. 1 272 [] 146.2 8.2e-41 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 54 to 305: score 318.2, E = 1.3e-92 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr + +leklG+Gs+G+Vyka+hk tg+iVA+K+++++++ + k fh03862 54 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIK---- 96 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei+i++ +++p++v++++++ +++l++V+Eyc+ G + +d+++ fh03862 97 --EISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAG----SVSDIIR- 139 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv r+++l +ede+ i+ +l+gleYLH ++ iHRD+K NILl+ +g+ fh03862 140 -LRNKTL--TEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGH 186 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD K+aDFG+A +l t+ + +t+ GTp++mAPEv++ gy +D fh03862 187 A----KLADFGVAGQL-TdTMAkRNTVIGTPFWMAPEVIQ-EIGYNCVAD 230 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds +WSlG++ +e++ GkpP+ + ++ + +++i + +p ++ ++ ++ fh03862 231 IWSLGITAIEMAEGKPPYADI---HpMRAIFMIPTNPPPTFRKPELWS-- 275 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +++ d++k cL k P++R ta+++lqHP++ fh03862 276 -------------DNFTDFVKQCLVKSPEQRATATQLLQHPFV 305 PF07714.7.fs: domain 1 of 1, from 54 to 305: score 144.3, E = 8.7e-42 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie + ++kLGeG++G+Vyk++ k +t++ VA+K + ++ fh03862 54 FDVLEKLGEGSYGSVYKAIHK----ETGQIVAIKQV---PVESD--- 90 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL +++ ++E+siM + d p++V+++G k+ + l+iV+Ey+ G+ fh03862 91 LQEIIKEISIMQQC-DSPHVVKYYGSYFKNTD-----LWIVMEYCGAGSV 134 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs d r + ++ Lt ++ + + kG+eYL+ ++ +HRD+ A N+L++ fh03862 135 SDIIRLR--NKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLN 182 enlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkygkFts ++++K +DFG a ++ ++ +k ++ +WmAPE++++ ++ fh03862 183 TEGHAKLADFGVAGQL-----TdTMAKRNTViGTPFWMAPEVIQEIGYNC 227 kSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyR..LprPenC D+WS G++ E+ G++P Y+++ + + + ++ + ++ +Pe+ fh03862 228 VADIWSLGITAIEMAE-GKPP-YADIHPMRAIFMI-PTNPPptFRKPELW 274 PdelYdlMlqCWaedPedRPtFsel..veeL<-* +d d +qC + Pe+R t ++l ++ + fh03862 275 SDNFTDFVKQCLVKSPEQRATATQLlqHPFV 305 PF00069.15.ls: domain 1 of 1, from 54 to 305: score 320.1, E = 3.6e-93 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr + +leklG+Gs+G+Vyka+hk tg+iVA+K+++++++ + k fh03862 54 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIK---- 96 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei+i++ +++p++v++++++ +++l++V+Eyc+ G + +d+++ fh03862 97 --EISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAG----SVSDIIR- 139 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv r+++l +ede+ i+ +l+gleYLH ++ iHRD+K NILl+ +g+ fh03862 140 -LRNKTL--TEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGH 186 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD K+aDFG+A +l t+ + +t+ GTp++mAPEv++ gy +D fh03862 187 A----KLADFGVAGQL-TdTMAkRNTVIGTPFWMAPEVIQ-EIGYNCVAD 230 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds +WSlG++ +e++ GkpP+ + ++ + +++i + +p ++ ++ ++ fh03862 231 IWSLGITAIEMAEGKPPYADI---HpMRAIFMIPTNPPPTFRKPELWS-- 275 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +++ d++k cL k P++R ta+++lqHP++ fh03862 276 -------------DNFTDFVKQCLVKSPEQRATATQLLQHPFV 305 PF07714.7.ls: domain 1 of 1, from 54 to 305: score 146.2, E = 8.2e-41 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie + ++kLGeG++G+Vyk++ k +t++ VA+K + ++ fh03862 54 FDVLEKLGEGSYGSVYKAIHK----ETGQIVAIKQV---PVESD--- 90 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL +++ ++E+siM + d p++V+++G k+ + l+iV+Ey+ G+ fh03862 91 LQEIIKEISIMQQC-DSPHVVKYYGSYFKNTD-----LWIVMEYCGAGSV 134 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs d r + ++ Lt ++ + + kG+eYL+ ++ +HRD+ A N+L++ fh03862 135 SDIIRLR--NKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLN 182 enlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkygkFts ++++K +DFG a ++ ++ +k ++ +WmAPE++++ ++ fh03862 183 TEGHAKLADFGVAGQL-----TdTMAKRNTViGTPFWMAPEVIQEIGYNC 227 kSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyR..LprPenC D+WS G++ E+ G++P Y+++ + + + ++ + ++ +Pe+ fh03862 228 VADIWSLGITAIEMAE-GKPP-YADIHPMRAIFMI-PTNPPptFRKPELW 274 PdelYdlMlqCWaedPedRPtFsel..veeL<-* +d d +qC + Pe+R t ++l ++ + fh03862 275 SDNFTDFVKQCLVKSPEQRATATQLlqHPFV 305 //