hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-12033584/chunk_1/iprscan-20080809-12033584.nocrc
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Query sequence: fh03862
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 361.4   5.6e-104   1
SM00219                                                 102.4    5.1e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      54   305 ..     1   280 []   102.4  5.1e-26
SM00220    1/1      54   305 ..     1   231 []   361.4 5.6e-104

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 54 to 305: score 102.4, E = 5.1e-26
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.keeFlrEaki
                         ++kLGeG +G Vyk++ k++++ VA+K +  +++++e+++E++i
     fh03862    54    FDVLEKLGEGSYGSVYKAIHKetgQIVAIKQVPVESdLQEIIKEISI 100  

                   MkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrkn
                   M +   + p++Vk +G   +          l+ivmEy+  G+  d +r +
     fh03862   101 MQQC--DSPHVVKYYGSYFKN-------TDLWIVMEYCGAGSVSDIIRLR 141  

                   rpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKIsD
                    ++l+ ++   +     kG eYL+ ++ +HRD+ A N+L++ ++++K +D
     fh03862   142 NKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLAD 191  

                   FGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkFtsk
                   FG +  l+d      +k   +     g+       WmAPE++++  ++  
     fh03862   192 FGVAGQLTDT----MAKRNTVI----GTP-----FWMAPEVIQEIGYNCV 228  

                   SDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpkPend
                    D+WS G++  E+   G++PY +     + + +++  + +     +P+  
     fh03862   229 ADIWSLGITAIEMAE-GKPPYAD-----IHPMRAIFMIPTN----PPPTF 268  

                   l.p.iSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                    +p++     +d   d  +qC    Pe+R t ++l ++ +    
     fh03862   269 RkPeL----WSDNFTDFVKQCLVKSPEQRATATQLlqHPFV    305  

SM00220: domain 1 of 1, from 54 to 305: score 361.4, E = 5.6e-104
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.....erilrEiki
                      +++l+klG+G++G+Vy+a++k+tg++vAiK+++ +++ + i++Ei+i
     fh03862    54    FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPvesdlQEIIKEISI 100  

                   Lkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglrk
                   +++ d P++Vk+y+++  +++l++VmEyc+   G++ d+++ r++     
     fh03862   101 MQQcDSPHVVKYYGSYFKnTDLWIVMEYCGA--GSVSDIIRLRNK----- 143  

                   vlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDFG
                    l+E+e++ +++ +l++LeYLH ++ iHRD+K  NiLL++++h KlaDFG
     fh03862   144 TLTEdEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTegHAKLADFG 193  

                   lArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyEll
                   +A ql+++  +++t++GTp++mAPEv+++ gY++  +DiWSlG++ +E++
     fh03862   194 VAGQLtdtmakrNTVIGTPFWMAPEVIqeiGYNC-VADIWSLGITAIEMA 242  

                   tGkpPFp...qldlifkkig............SpeakdLikklLvkdPek
                    GkpP+ + + + +if +  +++++ ++++ +S+ + d++k++Lvk Pe+
     fh03862   243 EGKPPYAdihPMRAIFMIPTnppptfrkpelwSDNFTDFVKQCLVKSPEQ 292  

                   Rlta.eaLedeldikaHPff<-*
                   R ta+++L+       HPf+   
     fh03862   293 RATAtQLLQ-------HPFV    305  

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