hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-12094327/chunk_1/iprscan-20080809-12094327.nocrc
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Query sequence: fh03964
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00439.15.ls Bromodomain                                 237.8    2.1e-68   2
PF00439.15.fs Bromodomain                                 233.9    3.2e-67   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00439.15.fs   1/2     549   636 ..     1    92 []    98.2  4.1e-27
PF00439.15.ls   1/2     549   636 ..     1    92 []   100.1  5.9e-27
PF00439.15.fs   2/2     671   759 ..     1    92 []   135.7  9.8e-38
PF00439.15.ls   2/2     671   759 ..     1    92 []   137.7  2.9e-38

Alignments of top-scoring domains:
PF00439.15.fs: domain 1 of 2, from 549 to 636: score 98.2, E = 4.1e-27
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l ++l+++++  +++ p+++pf+ pV+++   + DYY+iI++PMDL+
     fh03964   549    LSSILESIIND-MRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQ 592  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T +++++++ Y  s+eeF + ++L+++N  tYN+p ++  + +++   
     fh03964   593 TLRENVRKRLY-PSREEFREHLELIVKNSATYNGPKHSLTQISQS    636  

PF00439.15.ls: domain 1 of 2, from 549 to 636: score 100.1, E = 5.9e-27
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l ++l+++++  +++ p+++pf+ pV+++   + DYY+iI++PMDL+
     fh03964   549    LSSILESIIND-MRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQ 592  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T +++++++ Y  s+eeF + ++L+++N  tYN+p ++  + +++   
     fh03964   593 TLRENVRKRLY-PSREEFREHLELIVKNSATYNGPKHSLTQISQS    636  

PF00439.15.fs: domain 2 of 2, from 671 to 759: score 135.7, E = 9.8e-38
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +  +l++++ +++++ p+++pf++pV+++  ++PDYY++I +PMDL+
     fh03964   671    FSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLE 715  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TI+k++ ++kY +s+e F++D+nL++ N  +YN+p+s++ k A++   
     fh03964   716 TIRKNISKHKY-QSRESFLDDVNLILANSVKYNGPESQYTKTAQE    759  

PF00439.15.ls: domain 2 of 2, from 671 to 759: score 137.7, E = 2.9e-38
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +  +l++++ +++++ p+++pf++pV+++  ++PDYY++I +PMDL+
     fh03964   671    FSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLE 715  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TI+k++ ++kY +s+e F++D+nL++ N  +YN+p+s++ k A++   
     fh03964   716 TIRKNISKHKY-QSRESFLDDVNLILANSVKYNGPESQYTKTAQE    759  

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