hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-12094327/chunk_1/iprscan-20080809-12094327.nocrc
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Query sequence: fh03964
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00297                                                 271.1    8.3e-77   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00297    1/2     542   650 ..     1   118 []   121.3    1e-31
SM00297    2/2     664   773 ..     1   118 []   149.8  2.8e-40

Alignments of top-scoring domains:
SM00297: domain 1 of 2, from 542 to 650: score 121.3, E = 1e-31
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      + +++  l+++l+++++ +++         p ++pF+ pv++k   v
     fh03964   542    RTDpMVTLSSILESIINDMRDL--------PNTYPFHTPVNAKV--V 578  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                    DYy+iI++PMDL+t +++++++ Y s+eeF + ++L+++N  tYN+p +
     fh03964   579 KDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 628  

                   evykdAkkLeklfeeklkelpp<-*
                   +  + ++ + +l+ eklke ++   
     fh03964   629 SLTQISQSMLDLCDEKLKEKED    650  

SM00297: domain 2 of 2, from 664 to 773: score 149.8, E = 2.8e-40
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      + ++q  ++++l+ ++ +++         +p++wpF++pv+kk   v
     fh03964   664    DDDdQVAFSFILDNIVTQKMMA-------VPDSWPFHHPVNKKF--V 701  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDYy++I +PMDL+tI+k++ ++kY+s+e+F++D+nL++ N  +YN+p+s
     fh03964   702 PDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 751  

                   evykdAkkLeklfeeklkelpp<-*
                   ++ k A+++ +++ ++l+e+ +   
     fh03964   752 QYTKTAQEIVNVCYQTLTEYDE    773  

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