hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-12222780/chunk_1/iprscan-20080809-12222780.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh04042 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03546.4.fs Treacher Collins syndrome protein Treacle 977.1 6.1e-291 3 PF03546.4.ls Treacher Collins syndrome protein Treacle 845.8 2.1e-251 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03546.4.fs 1/3 7 111 .. 342 483 .] 102.4 1.3e-27 PF03546.4.fs 2/3 125 184 .. 1 64 [. 30.8 3.6e-08 PF03546.4.fs 3/3 185 574 .. 1 483 [] 843.9 7.5e-251 PF03546.4.ls 1/1 185 574 .. 1 483 [] 845.8 2.1e-251 Alignments of top-scoring domains: PF03546.4.fs: domain 1 of 3, from 7 to 111: score 102.4, E = 1.3e-27 *->eEDSeSlEEdSdSEEEdETlAQAkPlGklhQikAalaPaKePPAsAs eEDS S+ E+SdSEEE+ +AQAkP+Gk +Q++Aa aPaKe fh04042 7 EEDSQSSSEESDSEEEA--PAQAKPSGKAPQVRAASAPAKE------ 45 GKAvAaPrKGkaPvPnstvsARGqRsvPAAGKaGasAaQAqKGPvAGkq. +PrKG+aP P P K+G+ AaQ Gkq+ fh04042 46 -----SPRKGAAPAP------------P--RKTGPAAAQV----QVGKQe 72 dDSeSSSKEESDSdeEaPAavksAqviKPPlikvdqvRaaaaPAke<-* +DS SSS EESDSd Ea Aa +Aqv KP l+k qv PA + fh04042 73 EDSRSSS-EESDSDREALAAMNAAQV-KP-LGKSPQVK----PAST 111 PF03546.4.fs: domain 2 of 3, from 125 to 184: score 30.8, E = 3.6e-08 *->ikatPqKaGPvAvQvKAEkPeddSE.sSeEssDdaDSEDEaPvavta +P+K GP+ + k e+dSE+sSeEssD++D E P av fh04042 125 ---PPGKVGPATPSAQVGKWEEDSEsSSEESSDSSDGE--VPTAVAP 166 aQAktalKiPrakGtaaP<-* aQ k + i +ak t+ P fh04042 167 AQEKSLGNILQAKPTSSP 184 PF03546.4.fs: domain 3 of 3, from 185 to 574: score 843.9, E = 7.5e-251 *->ikatPqKaGPvAvQvKAEkPeddSEsSeEssDdaDSEDEaPvavtaa +k++PqKaGPvAvQvKAEkP+d+SEsSeEssD+aDSE EaP+a+taa fh04042 185 AKGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSE-EAPAAMTAA 230 QAktalKiPrakGtaaPkKesstksAPkVaPGKvRPVaaQAGKPeaKasE QAk+alKiP++k a+PkK+++t+sA kVaP vR V++Q ++Ka+ fh04042 231 QAKPALKIPQTK--ACPKKTNTTASA-KVAP--VR-VGTQ---APRKAG- 270 eaeSdaGesPAvAtlTtrPAkvkslskeSdvrevkTvlavsvGkaknLPC +a+S+aG+sPAvA++T+rPA+++s+s+eSd++e+kT+lav+vG+ak fh04042 271 TATSPAGSSPAVAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAK---- 316 PGkVGsAALkvlqVKkedVsvkssAELDSlGqGsPAKAKAalvLPqKvrP +VG k+lqVK+++V+vk+ SlGqG+ a+vLP+K++P fh04042 317 --SVG----KGLQVKAASVPVKG-----SLGQGT------APVLPGKTGP 349 vvTQVKadkqkGdSeSSEEeSDSEEEAAaAASaAQvKtalkKtQaKAssR +vTQVKa+kq+ dSeSSEEeSDSEE aAAS+AQvKt++kKtQaKA+ fh04042 350 TVTQVKAEKQE-DSESSEEESDSEE---AAASPAQVKTSVKKTQAKAN-- 393 KGtPAaAraaSaksHCKAGavsasaklvsPAlAkakQRSDvDssSkvkse PAaAra+Sak G++sa++k+v+ A+A+akQRS +Skvk++ fh04042 394 ---PAAARAPSAK-----GTISAPGKVVT-AAAQAKQRS----PSKVKPP 430 vaaPstsrVlaksGGKGlaskaalGkaVAtvatakTGPsvKAmAeEDSeS v++P++s+Vla+ G+as++++GkaVAt+a+a+TGP eEDS+S fh04042 431 VRNPQNSTVLAR----GPASVPSVGKAVATAAQAQTGP------EEDSGS 470 lEEdSdSEEEdETlAQAkPlGklhQikAalaPaKePPAsAsGKAvAaPrK +EE+SdSEEE+ETlAQ kP+Gk+hQi+AalaPaKe +PrK fh04042 471 SEEESDSEEEAETLAQVKPSGKTHQIRAALAPAKE-----------SPRK 509 GkaPvPnstvsARGqRsvPAAGKaGasAaQAqKGPvAGkqdDSeSSSKEE G+aP+P P GK+G+sAaQA GkqdDS+SSS EE fh04042 510 GAAPTP------------P--GKTGPSAAQA------GKQDDSGSSS-EE 538 SDSdeEaPAavksAqviKPPlikvdqvRaaaaPAke<-* SDSd+EaPAav+sAqviKPPli+vd++R++a+PA++ fh04042 539 SDSDGEAPAAVTSAQVIKPPLIFVDPNRSPAGPAAT 574 PF03546.4.ls: domain 1 of 1, from 185 to 574: score 845.8, E = 2.1e-251 *->ikatPqKaGPvAvQvKAEkPeddSEsSeEssDdaDSEDEaPvavtaa +k++PqKaGPvAvQvKAEkP+d+SEsSeEssD+aDSE EaP+a+taa fh04042 185 AKGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSE-EAPAAMTAA 230 QAktalKiPrakGtaaPkKesstksAPkVaPGKvRPVaaQAGKPeaKasE QAk+alKiP++k a+PkK+++t+sA kVaP vR V++Q ++Ka+ fh04042 231 QAKPALKIPQTK--ACPKKTNTTASA-KVAP--VR-VGTQ---APRKAG- 270 eaeSdaGesPAvAtlTtrPAkvkslskeSdvrevkTvlavsvGkaknLPC +a+S+aG+sPAvA++T+rPA+++s+s+eSd++e+kT+lav+vG+ak fh04042 271 TATSPAGSSPAVAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAK---- 316 PGkVGsAALkvlqVKkedVsvkssAELDSlGqGsPAKAKAalvLPqKvrP +VG k+lqVK+++V+vk+ SlGqG+ a+vLP+K++P fh04042 317 --SVG----KGLQVKAASVPVKG-----SLGQGT------APVLPGKTGP 349 vvTQVKadkqkGdSeSSEEeSDSEEEAAaAASaAQvKtalkKtQaKAssR +vTQVKa+kq+ dSeSSEEeSDSEE aAAS+AQvKt++kKtQaKA+ fh04042 350 TVTQVKAEKQE-DSESSEEESDSEE---AAASPAQVKTSVKKTQAKAN-- 393 KGtPAaAraaSaksHCKAGavsasaklvsPAlAkakQRSDvDssSkvkse PAaAra+Sak G++sa++k+v+ A+A+akQRS +Skvk++ fh04042 394 ---PAAARAPSAK-----GTISAPGKVVT-AAAQAKQRS----PSKVKPP 430 vaaPstsrVlaksGGKGlaskaalGkaVAtvatakTGPsvKAmAeEDSeS v++P++s+Vla+ G+as++++GkaVAt+a+a+TGP eEDS+S fh04042 431 VRNPQNSTVLAR----GPASVPSVGKAVATAAQAQTGP------EEDSGS 470 lEEdSdSEEEdETlAQAkPlGklhQikAalaPaKePPAsAsGKAvAaPrK +EE+SdSEEE+ETlAQ kP+Gk+hQi+AalaPaKe +PrK fh04042 471 SEEESDSEEEAETLAQVKPSGKTHQIRAALAPAKE-----------SPRK 509 GkaPvPnstvsARGqRsvPAAGKaGasAaQAqKGPvAGkqdDSeSSSKEE G+aP+P P GK+G+sAaQA GkqdDS+SSS EE fh04042 510 GAAPTP------------P--GKTGPSAAQA------GKQDDSGSSS-EE 538 SDSdeEaPAavksAqviKPPlikvdqvRaaaaPAke<-* SDSd+EaPAav+sAqviKPPli+vd++R++a+PA++ fh04042 539 SDSDGEAPAAVTSAQVIKPPLIFVDPNRSPAGPAAT 574 //