hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-08145585/chunk_1/iprscan-20090618-08145585.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh04242 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.ls Cadherin domain 272.6 7.4e-79 5 PF00028.8.fs Cadherin domain 266.1 6.6e-77 5 PF08266.2.fs Cadherin-like 160.4 1.6e-46 1 PF08266.2.ls Cadherin-like 162.4 1.1e-45 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 43 126 .. 1 84 [] 162.4 1.1e-45 PF08266.2.fs 1/1 43 126 .. 1 84 [] 160.4 1.6e-46 PF00028.8.fs 1/5 152 247 .. 1 107 [] 30.4 4.3e-08 PF00028.8.ls 1/5 152 247 .. 1 107 [] 32.2 1.6e-06 PF00028.8.fs 2/5 261 352 .. 1 107 [] 75.9 3.7e-21 PF00028.8.ls 2/5 261 352 .. 1 107 [] 77.8 3.3e-20 PF00028.8.fs 3/5 366 456 .. 1 107 [] 51.1 5.1e-14 PF00028.8.ls 3/5 366 456 .. 1 107 [] 52.9 1e-12 PF00028.8.ls 4/5 470 566 .. 1 107 [] 69.8 7.9e-18 PF00028.8.fs 4/5 470 566 .. 1 107 [] 68.0 7e-19 PF00028.8.ls 5/5 582 677 .. 1 107 [] 39.9 8.4e-09 PF00028.8.fs 5/5 594 677 .. 9 107 .] 40.7 4.6e-11 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 43 to 126: score 162.4, E = 1.1e-45 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF ++ + V+EE+++GsfVGNlAK LGL+v+eL++RgaR+vS++nk+ + fh04242 43 ETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDNKECL 89 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ql+ +tGdLl++E +DREeLCg+ epCvL ++vl++n fh04242 90 QLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKN 126 PF08266.2.fs: domain 1 of 1, from 43 to 126: score 160.4, E = 1.6e-46 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF ++ + V+EE+++GsfVGNlAK LGL+v+eL++RgaR+vS++nk+ + fh04242 43 ETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDNKECL 89 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ql+ +tGdLl++E +DREeLCg+ epCvL ++vl++n fh04242 90 QLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKN 126 PF00028.8.fs: domain 1 of 5, from 152 to 247: score 30.4, E = 4.3e-08 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF ++pEn+pvG l A D D g N+ +Y i +++ + fh04242 152 MLLEIPENSPVGAVFLLESAKDLD--VGINAVKSYTINPNSHfHVKI 196 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl r++pd+ + + k LD+Ee+ +e ++++ A D+ g+pp+ fh04242 197 RVNPDNRKYPE-LVLDKALDYEER--PELSFILTALDG-------GSPPR 236 sstatvtitVl<-* s+ta v++ V fh04242 237 SGTALVRVVVV 247 PF00028.8.ls: domain 1 of 5, from 152 to 247: score 32.2, E = 1.6e-06 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF ++pEn+pvG l A D D g N+ +Y i +++ + fh04242 152 MLLEIPENSPVGAVFLLESAKDLD--VGINAVKSYTINPNSHfHVKI 196 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl r++pd+ + + k LD+Ee+ +e ++++ A D+ g+pp+ fh04242 197 RVNPDNRKYPE-LVLDKALDYEER--PELSFILTALDG-------GSPPR 236 sstatvtitVl<-* s+ta v++ V fh04242 237 SGTALVRVVVV 247 PF00028.8.fs: domain 2 of 5, from 261 to 352: score 75.9, E = 3.7e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y++ + En+ G+ v tv A D D +g+N+ ++Y ++ +++ +++ fh04242 261 YEVKILENSILGSLVVTVSAWDLD--SGTNSELSYTFSHASEdiRKT 305 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F+I++++Gd i++t+pLD E+i + Y++++ AtD++ + fh04242 306 FEINQKSGD----ITLTAPLDFEAI--ESYSIIIQATDGG---------G 340 lsstatvtitVl<-* l++ tv+i+V fh04242 341 LFGKSTVRIQVM 352 PF00028.8.ls: domain 2 of 5, from 261 to 352: score 77.8, E = 3.3e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y++ + En+ G+ v tv A D D +g+N+ ++Y ++ +++ +++ fh04242 261 YEVKILENSILGSLVVTVSAWDLD--SGTNSELSYTFSHASEdiRKT 305 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F+I++++Gd i++t+pLD E+i + Y++++ AtD++ + fh04242 306 FEINQKSGD----ITLTAPLDFEAI--ESYSIIIQATDGG---------G 340 lsstatvtitVl<-* l++ tv+i+V fh04242 341 LFGKSTVRIQVM 352 PF00028.8.fs: domain 3 of 5, from 366 to 456: score 51.1, E = 5.1e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + +pEn+p t v++++++D+D +g+Ng+ + si ++ p F fh04242 366 ITSPIPENTP-ETVVMVFRIRDRD--SGDNGKMVCSIPEDIP---FV 406 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + + + n ++ t +pLDRE++ eY++t+ +tD g+p l fh04242 407 LKS-SVNNYYTLETERPLDRESR--AEYNITITVTDL-------GTPRLK 446 statvtitVl<-* ++ +t+ V fh04242 447 TEHNITVLVS 456 PF00028.8.ls: domain 3 of 5, from 366 to 456: score 52.9, E = 1e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + +pEn+p t v++++++D+D +g+Ng+ + si ++ p F fh04242 366 ITSPIPENTP-ETVVMVFRIRDRD--SGDNGKMVCSIPEDIP---FV 406 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + + + n ++ t +pLDRE++ eY++t+ +tD g+p l fh04242 407 LKS-SVNNYYTLETERPLDRESR--AEYNITITVTDL-------GTPRLK 446 statvtitVl<-* ++ +t+ V fh04242 447 TEHNITVLVS 456 PF00028.8.ls: domain 4 of 5, from 470 to 566: score 69.8, E = 7.9e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y v+En ++ +++++ AtD+D +g+N+++ Ys+l+ ++ + fh04242 470 YALFVRENNSPALHIGSISATDRD--SGTNAQVNYSLLPSQDphlpl 514 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I+ d+G ++ ++LD+E+ + + + v AtD+ g fh04242 515 ASLVSINADNGH----LFALRSLDYEAL--QGFQFRVGATDH-------G 551 gpplsstatvtitVl<-* +p+lss+a v++ Vl fh04242 552 SPALSSEALVRVLVL 566 PF00028.8.fs: domain 4 of 5, from 470 to 566: score 68.0, E = 7e-19 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y v+En ++ +++++ AtD+D +g+N+++ Ys+l+ ++ + fh04242 470 YALFVRENNSPALHIGSISATDRD--SGTNAQVNYSLLPSQDphlpl 514 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I+ d+G ++ ++LD+E+ + + + v AtD+ g fh04242 515 ASLVSINADNGH----LFALRSLDYEAL--QGFQFRVGATDH-------G 551 gpplsstatvtitVl<-* +p+lss+a v++ Vl fh04242 552 SPALSSEALVRVLVL 566 PF00028.8.ls: domain 5 of 5, from 582 to 677: score 39.9, E = 8.4e-09 *->ysasvpEnap....vGtevltvtAtDaDdPlgpNgrirYsilggnpg sa + E +p ++G v+ v A+D D +g+N+ ++Y +l+ ++ fh04242 582 GSAPCTELVPwaaePGYLVTKVVAVDGD--SGQNAWLSYQLLKATEP 626 gwFrIdpdtGdnegiisttkpLDREeif.ngeYeLtveAtDadpllasgg g F + ++G+ ++t++ L ++ +++L+v+++D+ g fh04242 627 GLFGVWAHNGE----VRTARLLSE---RdAAKHRLVVLVKDN-------G 662 gpplsstatvtitVl<-* +pp+s+tat+++ + fh04242 663 EPPRSATATLHVLLV 677 PF00028.8.fs: domain 5 of 5, from 594 to 677: score 40.7, E = 4.6e-11 *->apvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdn a +G v+ v A+D D +g+N+ ++Y +l+ ++g F + ++G+ fh04242 594 AEPGYLVTKVVAVDGD--SGQNAWLSYQLLKATEPGLFGVWAHNGE- 637 egiisttkpLDREeif.ngeYeLtveAtDadpllasgggpplsstatvti ++t++ L ++ +++L+v+++D+ g+pp+s+tat+++ fh04242 638 ---VRTARLLSE---RdAAKHRLVVLVKDN-------GEPPRSATATLHV 674 tVl<-* + fh04242 675 LLV 677 //