hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-08145585/chunk_1/iprscan-20090618-08145585.nocrc
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Query sequence: fh04242
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 437.6   6.6e-127   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      68   145 ..     1   121 []     9.6     0.27
SM00112    2/6     169   254 ..     1   121 []    81.0  1.4e-19
SM00112    3/6     278   359 ..     1   121 []   103.1  3.2e-26
SM00112    4/6     382   463 ..     1   121 []    84.1  1.7e-20
SM00112    5/6     487   573 ..     1   121 []   101.6  9.3e-26
SM00112    6/6     603   684 ..     1   121 []    58.1  1.1e-12

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 68 to 145: score 9.6, E = 0.27
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      + ++ + s      ++          ++s+++++  ++d++tG    
     fh04242    68    LEVSELSS----RGAR----------VVSndnkeCLQLDTNTG---- 96   

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++ +++ LDREe ++ +     +   L  ++  ++        
     fh04242    97 -------DLLLREMLDREELCGSN-----EPCVLYFQVLMKN-------- 126  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              +   ++  +V D+ND+ P   
     fh04242   127 ----------PTQFLQIELQVRDINDHSP    145  

SM00112: domain 2 of 6, from 169 to 254: score 81.0, E = 1.4e-19
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils......lFsIdpetGtng
                       sA D+D g    N+        +Y+i+++++ + + +++p++  ++
     fh04242   169    ESAKDLDVG---INAV------KSYTINPnshfhvKIRVNPDNR-KY 205  

                   psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                   p       ++++ k+LD+Ee+         +e +++ +A DgG+pp    
     fh04242   206 P-------ELVLDKALDYEER---------PELSFILTALDGGSPP---- 235  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              +s+ta v+v V+D+NDN P   
     fh04242   236 -----------RSGTALVRVVVVDINDNSP    254  

SM00112: domain 3 of 6, from 278 to 359: score 103.1, E = 3.2e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      vsA D+Dsg   +N++      ++Y+++  +++ ++ F+I++++G  
     fh04242   278    VSAWDLDSG---TNSE------LSYTFSHasedirkTFEINQKSG-- 313  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +it+t+pLD+E++         ++Y+++++AtDgGg     
     fh04242   314 ---------DITLTAPLDFEAI---------ESYSIIIQATDGGG----- 340  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               l + +tv+++V DvNDNaP   
     fh04242   341 ------------LFGKSTVRIQVMDVNDNAP    359  

SM00112: domain 4 of 6, from 382 to 463: score 84.1, E = 1.7e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      ++ +D+Dsg   +Ngk       ++si ++ +F + ++  +      
     fh04242   382    FRIRDRDSG---DNGK------MVCSIPEdiPFVLKSSVNN------ 413  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++++ t +pLDRE++         +eY++t+++tD G+p+        
     fh04242   414 --YYTLETERPLDRESR---------AEYNITITVTDLGTPR-------- 444  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l ++  +tv V DvNDNaP   
     fh04242   445 -------LKTEHNITVLVSDVNDNAP    463  

SM00112: domain 5 of 6, from 487 to 573: score 101.6, E = 9.3e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      +sAtD+Dsg   +N++      v Ys+l++++++ +  +l sI++++
     fh04242   487    ISATDRDSG---TNAQ------VNYSLLPsqdphlplasLVSINADN 524  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            ++++++LD+E+          + ++++v AtD+G+p 
     fh04242   525 GH-----------LFALRSLDYEAL---------QGFQFRVGATDHGSPA 554  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  lss+a v+v VlD NDN P   
     fh04242   555 ---------------LSSEALVRVLVLDANDNSP    573  

SM00112: domain 6 of 6, from 603 to 684: score 58.1, E = 1.1e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D Dsg   +N++      ++Y++l  ++++lF + +++G    
     fh04242   603    VVAVDGDSG---QNAW------LSYQLLKatepgLFGVWAHNG---- 636  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++t++ L   +          ++++L+v ++D+G+pp     
     fh04242   637 -------EVRTARLLSERDA---------AKHRLVVLVKDNGEPP----- 665  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s+tat++v ++D    +    
     fh04242   666 ----------RSATATLHVLLVDGFSQPY    684  

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