hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-16461484/chunk_1/iprscan-20090630-16461484.nocrc
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Query sequence: fh06860s2
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00454                                                 160.1    2.2e-43   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00454    1/3     657   724 ..     1    67 []    57.0  2.5e-12
SM00454    2/3     729   795 ..     1    67 []    65.0  9.4e-15
SM00454    3/3     817   889 ..     1    67 []    38.1  1.2e-06

Alignments of top-scoring domains:
SM00454: domain 1 of 3, from 657 to 724: score 57.0, E = 2.5e-12
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      + +w+ e+V++WL+  gl+ Y +  + +  +g+ ll+ +++++ kel
   fh06860s2   657    FAkWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQDLEKEL 703  

                   GitllGhRkkIlsaiqklkeq<-*
                   Gi+   hRkk++ a+q l ++   
   fh06860s2   704 GIKHSLHRKKLQLALQALGSE    724  

SM00454: domain 2 of 3, from 729 to 795: score 65.0, E = 9.4e-15
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                        + +++ V +WL+ igl+qY+ +F + ++dg++l+ +t  +dL++l
   fh06860s2   729    HGkLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMT-VDDLLSL 774  

                   GitllGhRkkIlsaiqklkeq<-*
                   ++ ++ h++ I +aiq l+ +   
   fh06860s2   775 KVVSVLHHLSIKRAIQVLRIN    795  

SM00454: domain 3 of 3, from 817 to 889: score 38.1, E = 1.2e-06
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.....see
                      v +w+++ V eWL+s +l++Ya+n+r  g++g +++l+ + + ++++
   fh06860s2   817    VQkWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPrfnveTMA 863  

                   dLkelGitllGhRkkIlsaiqklkeq<-*
                    L+++  +++  R+ ++  ++ l      
   fh06860s2   864 QLLNIPPNKTLLRRHLATHFNLLIGA    889  

//