hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-13130705/chunk_1/iprscan-20080809-13130705.nocrc
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Query sequence: fh08237
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01299.8.fs Lysosome-associated membrane glycoprotein (L   503.0   3.1e-148   1
PF01299.8.ls Lysosome-associated membrane glycoprotein (L   401.8   8.9e-118   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01299.8.fs   1/1      33   281 ..     1   261 [.   503.0 3.1e-148
PF01299.8.ls   1/1      33   367 ..     1   390 []   401.8 8.9e-118

Alignments of top-scoring domains:
PF01299.8.fs: domain 1 of 1, from 33 to 281: score 503.0, E = 3.1e-148
                   *->AnlsvnFsvkYeTtlnkqnktfdlpskatVthngSsCGsdnvsdPkl
                      An+s++Fsv+Y+T+++++n+tfdlps+atV+ n+SsCG++n+sdP+l
     fh08237    33    ANFSAAFSVNYDTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSL 79   

                   aiqFGsGhswtlnFTKnatrYsvesitfsYNlsDtthFPnAtskgivTVd
                   +i+FG+Gh++tlnFT+natrYsv+ ++f+YNlsDt++FPnA+sk+i+TV+
     fh08237    80 VIAFGRGHTLTLNFTRNATRYSVQLMSFVYNLSDTHLFPNASSKEIKTVE 129  

                   sksdikadlnkpfrCtssttvemknVtqtlwdatvqAfvqNgtfSknetr
                   s++di+ad++k++rC+s t+v+m+nVt+tl+dat+qA+++N++fS++etr
     fh08237   130 SITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLSNSSFSRGETR 179  

                   CeeDkpspTvaPtihttvptastTitPsPsPtPvpkenPtvGnYsvtngN
                   Ce+D+pspT+aP+++           PsPsP+Pvpk +P+v++Y+v+++N
     fh08237   180 CEQDRPSPTTAPPAP-----------PSPSPSPVPK-SPSVDKYNVSGTN 217  

                   gTCLLAsmgLQLNItyekkdnktvtrilNinPntTkasGsCestsatLkL
                   gTCLLAsmgLQLN+tye+kdn+tvtr+lNinPn+T+asGsC+++++tL+L
     fh08237   218 GTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLEL 267  

                   nfsqityLdFgFav<-*
                   +++++t+L F+F++   
     fh08237   268 HSEGTTVLLFQFGM    281  

PF01299.8.ls: domain 1 of 1, from 33 to 367: score 401.8, E = 8.9e-118
                   *->AnlsvnFsvkYeTtlnkqnktfdlpskatVthngSsCGsdnvsdPkl
                      An+s++Fsv+Y+T+++++n+tfdlps+atV+ n+SsCG++n+sdP+l
     fh08237    33    ANFSAAFSVNYDTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSL 79   

                   aiqFGsGhswtlnFTKnatrYsvesitfsYNlsDtthFPnAtskgivTVd
                   +i+FG+Gh++tlnFT+natrYsv+ ++f+YNlsDt++FPnA+sk+i+TV+
     fh08237    80 VIAFGRGHTLTLNFTRNATRYSVQLMSFVYNLSDTHLFPNASSKEIKTVE 129  

                   sksdikadlnkpfrCtssttvemknVtqtlwdatvqAfvqNgtfSknetr
                   s++di+ad++k++rC+s t+v+m+nVt+tl+dat+qA+++N++fS++etr
     fh08237   130 SITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLSNSSFSRGETR 179  

                   CeeDkpspTvaPtihttvptastTitPsPsPtPvpkenPtvGnYsvtngN
                   Ce+D+pspT+aP+++           PsPsP+Pvpk +P+v++Y+v+++N
     fh08237   180 CEQDRPSPTTAPPAP-----------PSPSPSPVPK-SPSVDKYNVSGTN 217  

                   gTCLLAsmgLQLNItyekkdnktvtrilNinPntTkasGsCestsatLkL
                   gTCLLAsmgLQLN+tye+kdn+tvtr+lNinPn+T+asGsC+++++tL+L
     fh08237   218 GTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLEL 267  

                   nfsqityLdFgFavnassspvvkFyLqeVnvnmtlpdAngstFsasNnsL
                   +++++t+L F+F++        +++  +  v++t   A g        s 
     fh08237   268 HSEGTTVLLFQFGMVRLGR---HLSGGAHCVSTTSFCALGLLMG---GSV 311  

                   selqApLGnSYkCnkEesisVskafqlnvFnLrVQAFkVtdkgkFGsaee
                   ++  A+L   + C               ++   V  F  +     ++ + 
     fh08237   312 RKEAASL---FFCLPF------------ILGFLVPWFPSP----LSIPFI 342  

                   CsaDedNfLiPIaVGaALaGLllLVLIAYlIGRKRshaGYQti<-*
                     aD+        VG+A    +  V  A          G Q++   
     fh08237   343 DAADD--------VGGA---AVPTVGVA-------AGEGMQAV    367  

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