hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-13191078/chunk_1/iprscan-20080809-13191078.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh08793 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01404.9.ls Ephrin receptor ligand binding domain 376.6 3.6e-110 1 PF01404.9.fs Ephrin receptor ligand binding domain 374.6 9e-110 1 PF07714.7.fs Protein tyrosine kinase 287.7 2.1e-83 2 PF07714.7.ls Protein tyrosine kinase 284.5 1.8e-82 1 PF00041.11.ls Fibronectin type III domain 104.0 4.2e-28 2 PF00041.11.fs Fibronectin type III domain 100.0 4.6e-28 2 PF00069.15.fs Protein kinase domain 98.9 5.5e-28 2 PF07647.7.fs SAM domain (Sterile alpha motif) 81.9 2.4e-23 1 PF00069.15.ls Protein kinase domain 86.2 9e-23 1 PF07647.7.ls SAM domain (Sterile alpha motif) 83.8 4.8e-22 1 PF00536.20.fs SAM domain (Sterile alpha motif) 51.2 1.9e-14 1 PF00536.20.ls SAM domain (Sterile alpha motif) 49.7 9.4e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01404.9.fs 1/1 36 235 .. 1 177 [] 374.6 9e-110 PF01404.9.ls 1/1 36 235 .. 1 177 [] 376.6 3.6e-110 PF00041.11.ls 1/2 373 473 .. 1 84 [] 32.5 1.4e-06 PF00041.11.fs 1/2 373 473 .. 1 84 [] 30.5 4e-08 PF00041.11.fs 2/2 491 575 .. 1 84 [] 69.5 2.6e-19 PF00041.11.ls 2/2 491 575 .. 1 84 [] 71.5 2.5e-18 PF00069.15.fs 1/2 673 797 .. 1 133 [. 51.3 1.9e-14 PF07714.7.ls 1/1 673 918 .. 1 272 [] 284.5 1.8e-82 PF00069.15.ls 1/1 673 918 .. 1 287 [] 86.2 9e-23 PF07714.7.fs 1/2 673 815 .. 1 155 [. 134.6 5.9e-39 PF00069.15.fs 2/2 828 918 .. 176 287 .] 47.6 2.1e-13 PF07714.7.fs 2/2 829 918 .. 181 272 .] 153.1 2.5e-44 PF07647.7.fs 1/1 948 1015 .. 1 72 [] 81.9 2.4e-23 PF07647.7.ls 1/1 948 1015 .. 1 72 [] 83.8 4.8e-22 PF00536.20.ls 1/1 949 1013 .. 1 65 [] 49.7 9.4e-12 PF00536.20.fs 1/1 957 1013 .. 9 65 .] 51.2 1.9e-14 Alignments of top-scoring domains: PF01404.9.fs: domain 1 of 1, from 36 to 235: score 374.6, E = 9e-110 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVm. E++LLDt+++t+E+GWltyPp+GW+Evs+lD+++r +rT+++C+V++ fh08793 36 EEVLLDTTGETSEIGWLTYPPGGWDEVSVLDDQRRLTRTFEACHVAg 82 ...epnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFN ++ +Q+NWL+T+++eRrgAqR +++L+F+vR C+Sl++++GtC+ETF+ fh08793 83 appGTGQDNWLQTHFVERRGAQRAHIRLHFSVRACSSLGVSGGTCRETFT 132 LYYyESDedvgta.lpawrenqyiKvDTIAADESFtqvDlgdr....... LYY+++ e++ ++++ +w+ ++++KvDTIAADESF++++ +++++++ fh08793 133 LYYRQAEEPDSPDsVSSWHLKRWTKVDTIAADESFPSSSSSSSssssaaw 182 ...........vlKLNtEvRsvGPLsKkGFYLAFQDvGACiALvSVRVFY ++++ +++ l+LN+++Rs+GPL+++GFY+AFQD+GAC+ALv+VR+F fh08793 183 avgphgagqraGLQLNVKERSFGPLTQRGFYVAFQDTGACLALVAVRLFS 232 KKC<-* ++C fh08793 233 YTC 235 PF01404.9.ls: domain 1 of 1, from 36 to 235: score 376.6, E = 3.6e-110 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVm. E++LLDt+++t+E+GWltyPp+GW+Evs+lD+++r +rT+++C+V++ fh08793 36 EEVLLDTTGETSEIGWLTYPPGGWDEVSVLDDQRRLTRTFEACHVAg 82 ...epnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFN ++ +Q+NWL+T+++eRrgAqR +++L+F+vR C+Sl++++GtC+ETF+ fh08793 83 appGTGQDNWLQTHFVERRGAQRAHIRLHFSVRACSSLGVSGGTCRETFT 132 LYYyESDedvgta.lpawrenqyiKvDTIAADESFtqvDlgdr....... LYY+++ e++ ++++ +w+ ++++KvDTIAADESF++++ +++++++ fh08793 133 LYYRQAEEPDSPDsVSSWHLKRWTKVDTIAADESFPSSSSSSSssssaaw 182 ...........vlKLNtEvRsvGPLsKkGFYLAFQDvGACiALvSVRVFY ++++ +++ l+LN+++Rs+GPL+++GFY+AFQD+GAC+ALv+VR+F fh08793 183 avgphgagqraGLQLNVKERSFGPLTQRGFYVAFQDTGACLALVAVRLFS 232 KKC<-* ++C fh08793 233 YTC 235 PF00041.11.ls: domain 1 of 2, from 373 to 473: score 32.5, E = 1.4e-06 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge PsaP+ l ++ + + l l+W P++ g++ ++v + +++ g + fh08793 373 PSAPQELWFEV-QGSALMLHWRLPRelGGRGDLLFNVVC-KECEGRQ 417 ...............wkelt...vpgtttsytltgLkPgteYtvrVqAvn ++ ++++++ ++ ++++++++++ t++++ + gL+++++Y + VqAvn fh08793 418 epasggggtchrcrdEVHFDprqRGLTESRVLVGGLRAHVPYILEVQAVN 467 ggGGpeS<-* g+ ++ S fh08793 468 GV-SELS 473 PF00041.11.fs: domain 1 of 2, from 373 to 473: score 30.5, E = 4e-08 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge PsaP+ l ++ + + l l+W P++ g++ ++v + +++ g + fh08793 373 PSAPQELWFEV-QGSALMLHWRLPRelGGRGDLLFNVVC-KECEGRQ 417 ...............wkelt...vpgtttsytltgLkPgteYtvrVqAvn ++ ++++++ ++ ++++++++++ t++++ + gL+++++Y + VqAvn fh08793 418 epasggggtchrcrdEVHFDprqRGLTESRVLVGGLRAHVPYILEVQAVN 467 ggGGpeS<-* g+ ++ S fh08793 468 GV-SELS 473 PF00041.11.fs: domain 2 of 2, from 491 to 575: score 69.5, E = 2.6e-19 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. Psa+ ++ ++ s+s+t+sW P++ ng i Y+++y +++ +++ fh08793 491 PSAVPVVHQVSRASNSITVSWPQPDqTNGNILDYQLRY-YDQ-AEDe 535 wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +++t+++ t+++t+t L Pg Y ++V+A++++G+Gp+ fh08793 536 SHSFTLTSETNTATVTQLSPGHIYGFQVRARTAAGhGPYG 575 PF00041.11.ls: domain 2 of 2, from 491 to 575: score 71.5, E = 2.5e-18 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. Psa+ ++ ++ s+s+t+sW P++ ng i Y+++y +++ +++ fh08793 491 PSAVPVVHQVSRASNSITVSWPQPDqTNGNILDYQLRY-YDQ-AEDe 535 wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +++t+++ t+++t+t L Pg Y ++V+A++++G+Gp+ fh08793 536 SHSFTLTSETNTATVTQLSPGHIYGFQVRARTAAGhGPYG 575 PF00069.15.fs: domain 1 of 2, from 673 to 797: score 51.3, E = 1.9e-14 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt ++++e++G GsfG+V++++ + g+++++VA+ ++ +++s + +t fh08793 673 IKIEEVIGTGSFGEVRQGRLQPRGRreqTVAIQALWAGGAESLQ-MT 718 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy + + +++l ++HpNI+rl +v++ ++ l + +E++e G L ++ fh08793 719 FLGR--AAVLGQFQHPNILRLEGVVTKSRPLMVLTEFMELG----PLDSF 762 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHR<-* l+ +r+g + s ++ + + ++ +++YL s ++HR fh08793 763 LR--QREGQF--SSLQLVAMQRGVAAAMQYLSSFAFVHR 797 PF07714.7.ls: domain 1 of 1, from 673 to 918: score 284.5, E = 1.8e-82 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei +k+ +++G G+FGeV +G+l + + e++VA+ L ga + fh08793 673 IKIEEVIGTGSFGEVRQGRLQ-PRGRREQTVAIQALwAG-GAESL-- 715 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd + Fl A+++ ++ +HpNi+rL Gv+tk ++P l++ tE+me+G fh08793 716 -QMTFLGRAAVLGQF-QHPNILRLEGVVTK-SRP----LMVLTEFMELGP 758 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L++fLr++ +++++ +L+ + + +A++M+YL+s fvHR L A +LV fh08793 759 LDSFLRQR--EGQFSSLQLVAMQRGVAAAMQYLSSFAFVHRSLSAHSVLV 806 senlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtsk +++lv+K++ G + + + +W APE++++gk t+ fh08793 807 NSHLVCKVARLGHSPQG-------PSCL-----LRWAAPEVIAHGKHTTS 844 SDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPde SDVWSFG+l+WE++++Ge P Y++ms +evl+ + e+ RLp+P++CP+ fh08793 845 SDVWSFGILMWEVMSYGERP-YWDMSEQEVLNAI-EQEFRLPPPPGCPPG 892 lYdlMlqCWaedPedRPtFselveeL<-* l+ lMl+ W++d ++RP F +lv + fh08793 893 LHLLMLDTWQKDRARRPHFDQLVAAF 918 PF00069.15.ls: domain 1 of 1, from 673 to 918: score 86.2, E = 9e-23 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt ++++e++G GsfG+V++++ + g+++++VA+ ++ +++s + +t fh08793 673 IKIEEVIGTGSFGEVRQGRLQPRGRreqTVAIQALWAGGAESLQ-MT 718 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy + + +++l ++HpNI+rl +v++ ++ l + +E++e G L ++ fh08793 719 FLGR--AAVLGQFQHPNILRLEGVVTKSRPLMVLTEFMELG----PLDSF 762 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn l+ +r+g + s ++ + + ++ +++YL s ++HR L +L+++ fh08793 763 LR--QREGQF--SSLQLVAMQRGVAAAMQYLSSFAFVHRSLSAHSVLVNS 808 ngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygt + v+ K+a G + + s l ++++APEv+ + +++t fh08793 809 HLVC----KVARLGHS----PqGPScL------LRWAAPEVIA-HGKHTT 843 kvDvWSlGvilyellt.GkpPFsgevqdsldqlqlirkilgpplefdspe ++DvWS+G++++e+++ G+ P+++ ++++++ i + +++ + p fh08793 844 SSDVWSFGILMWEVMSyGERPYWDM-----SEQEVLNAIEQ-EFRLPPPP 887 wdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* ++ + + L+ + ++kD ++R+ +++++ f fh08793 888 GCP-------------PGLHLLMLDTWQKDRARRPHFDQLVAA--F 918 PF07714.7.fs: domain 1 of 2, from 673 to 815: score 134.6, E = 5.9e-39 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei +k+ +++G G+FGeV +G+l + + e++VA+ L ga + fh08793 673 IKIEEVIGTGSFGEVRQGRLQ-PRGRREQTVAIQALwAG-GAESL-- 715 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd + Fl A+++ ++ +HpNi+rL Gv+tk ++P l++ tE+me+G fh08793 716 -QMTFLGRAAVLGQF-QHPNILRLEGVVTK-SRP----LMVLTEFMELGP 758 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L++fLr++ +++++ +L+ + + +A++M+YL+s fvHR L A +LV fh08793 759 LDSFLRQR--EGQFSSLQLVAMQRGVAAAMQYLSSFAFVHRSLSAHSVLV 806 senlvVKIs<-* +++lv+K++ fh08793 807 NSHLVCKVA 815 PF00069.15.fs: domain 2 of 2, from 828 to 918: score 47.6, E = 2.1e-13 *->pwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqdsl ++++APEv+ + +++t++DvWS+G++++e+++ G+ P+++ fh08793 828 LRWAAPEVIA-HGKHTTSSDVWSFGILMWEVMSyGERPYWDM----- 868 dqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkD ++++++ i + +++ + p ++ + + L+ + ++kD fh08793 869 SEQEVLNAIEQ-EFRLPPPPGCP-------------PGLHLLMLDTWQKD 904 PskRltaeeilqHPwf<-* ++R+ +++++ f fh08793 905 RARRPHFDQLVAA--F 918 PF07714.7.fs: domain 2 of 2, from 829 to 918: score 153.1, E = 2.5e-44 *->kWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevl +W APE++++gk t+ SDVWSFG+l+WE++++Ge P Y++ms +evl fh08793 829 RWAAPEVIAHGKHTTSSDVWSFGILMWEVMSYGERP-YWDMSEQEVL 874 ellyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* + + e+ RLp+P++CP+ l+ lMl+ W++d ++RP F +lv + fh08793 875 NAI-EQEFRLPPPPGCPPGLHLLMLDTWQKDRARRPHFDQLVAAF 918 PF07647.7.fs: domain 1 of 1, from 948 to 1015: score 81.9, E = 2.4e-23 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ++++l+s ++WL++igl ++Y dnFs++g+ +++++ ++l++edL fh08793 948 LDFPCLDSPQAWLSAIGL-ECYQDNFSKFGLCTFSDV-AQLSLEDL- 991 klalGitsvghRkkilkkiqelkqq<-* alGit++gh+kk+l++iq l+q+ fh08793 992 P-ALGITLAGHQKKLLHHIQLLQQH 1015 PF07647.7.ls: domain 1 of 1, from 948 to 1015: score 83.8, E = 4.8e-22 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ++++l+s ++WL++igl ++Y dnFs++g+ +++++ ++l++edL fh08793 948 LDFPCLDSPQAWLSAIGL-ECYQDNFSKFGLCTFSDV-AQLSLEDL- 991 klalGitsvghRkkilkkiqelkqq<-* alGit++gh+kk+l++iq l+q+ fh08793 992 P-ALGITLAGHQKKLLHHIQLLQQH 1015 PF00536.20.ls: domain 1 of 1, from 949 to 1013: score 49.7, E = 9.4e-12 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d+ +s + WL +igl+ Y dnF + g+ ++++++ql+ eDL +lG fh08793 949 DFPCLDSPQAWLSAIGLECYQDNFSKFGLCTFSDVAQLSLEDLPALG 995 vtllGHrkKIlssIqgLk<-* +tl+GH+kK+l+ Iq L fh08793 996 ITLAGHQKKLLHHIQLLQ 1013 PF00536.20.fs: domain 1 of 1, from 957 to 1013: score 51.2, E = 1.9e-14 *->geWLesiglgqYidnFlsagyidgdtllqlteeDLedlGvtllGHrk + WL +igl+ Y dnF + g+ ++++++ql+ eDL +lG+tl+GH+k fh08793 957 QAWLSAIGLECYQDNFSKFGLCTFSDVAQLSLEDLPALGITLAGHQK 1003 KIlssIqgLk<-* K+l+ Iq L fh08793 1004 KLLHHIQLLQ 1013 //