hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-13191078/chunk_1/iprscan-20080809-13191078.nocrc
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Query sequence: fh08793
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00615                                                 336.8    1.5e-96   1
SM00219                                                 244.6    8.1e-69   1
SM00060                                                  79.0    5.8e-19   2
SM00454                                                  70.3    2.5e-16   1
SM00220                                                  68.6      8e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00615    1/1      36   235 ..     1   184 []   336.8  1.5e-96
SM00060    1/2     373   472 ..     1    69 []    27.1   0.0024
SM00060    2/2     491   572 ..     1    69 []    51.9  8.4e-11
SM00220    1/1     673   922 ..     1   231 []    68.6    8e-16
SM00219    1/1     673   918 ..     1   280 []   244.6  8.1e-69
SM00454    1/1     948  1015 ..     1    67 []    70.3  2.5e-16

Alignments of top-scoring domains:
SM00615: domain 1 of 1, from 36 to 235: score 336.8, E = 1.5e-96
                   *->EVvLLDtktetgeLgWttyPpsggtWeEvsglDeknnpiRtYqvCnV
                      E+vLLDt++et+e+gW+tyPp+g  W+Evs+lD++++  Rt++ C+V
     fh08793    36    EEVLLDTTGETSEIGWLTYPPGG--WDEVSVLDDQRRLTRTFEACHV 80   

                   mein.esnQNNWLrTnfIeRrgAsRiYVELkFTvRDCnSlpgvaglsCKE
                   ++ +++ +Q+NWL+T+f+eRrgA+R +++L+F+vR C+Sl+ ++g +C+E
     fh08793    81 AGAPpGTGQDNWLQTHFVERRGAQRAHIRLHFSVRACSSLGVSGG-TCRE 129  

                   TFNLYYyEsDsdtatastpfwmenpyiKvDTiAADesftqvd........
                   TF+LYY ++++ + ++s  +w+ ++++KvDTiAADesf  + ++++++++
     fh08793   130 TFTLYYRQAEEPDSPDSVSSWHLKRWTKVDTIAADESFPSSSssssssss 179  

                   .........lGdrv.vklNtevrsvGplskkGfYLAFQdqGACvaLlsVr
                        ++++ G+r++++lN++ rs+Gpl+++GfY+AFQd+GAC+aL++Vr
     fh08793   180 aawavgphgAGQRAgLQLNVKERSFGPLTQRGFYVAFQDTGACLALVAVR 229  

                   VFYkkC<-*
                   +F ++C   
     fh08793   230 LFSYTC    235  

SM00060: domain 1 of 2, from 373 to 472: score 27.1, E = 0.0024
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg
                      P++P+    l ++ v  +       + l+W  P + ++ ++    v 
     fh08793   373    PSAPQE---LWFE-VQGS------ALMLHWRLPrelggrgdllfNVV 409  

                   Yr....................................ytltgLkPgaep
                   +++ ++++++ ++++++  + ++++  ++++++ +++++ + gL+++   
     fh08793   410 CKecegrqepasggggtchrcrdevhfdprqrgltesrVLVGGLRAH--- 456  

                   wteYefrVrAvngndaGeg<-*
                      Y   V+Avng  + e    
     fh08793   457 -VPYILEVQAVNG--VSEL    472  

SM00060: domain 2 of 2, from 491 to 572: score 51.9, E = 8.4e-11
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                      P++++    ++ ++  s+      s+t+sW  P+  +++i+ Y+ + 
     fh08793   491    PSAVPV---VHQVSRASN------SITVSWPQPdqtngnILDYQlry 528  

                   ...................ytltgLkPgaepwteYefrVrAvngndaGeg
                    ++ ++++ + + +++++++t+t L+Pg    + Y f+VrA+++  aG g
     fh08793   529 ydqaedeshsftltsetntATVTQLSPG----HIYGFQVRARTA--AGHG 572  

                   <-*
                      
     fh08793     -     -    

SM00220: domain 1 of 1, from 673 to 922: score 68.6, E = 8e-16
                   *->YellkklGkGaFGkVylardkk...tgrlvAiKvik........eri
                       ++ +++G G+FG+V+++r   +++  + vAi  +  ++ ++ + ++
     fh08793   673    IKIEEVIGTGSFGEVRQGRLQPrgrREQTVAIQALWaggaeslqMTF 719  

                   lrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrg
                   l   ++L + +HPNI +L +v   +  l + +E++e   G L ++l++r 
     fh08793   720 LGRAAVLGQfQHPNILRLEGVVTKsRPLMVLTEFMEL--GPLDSFLRQRE 767  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hv
                   ++     +s  +   + r ++ a++YL s  ++HR L    +L++s+ + 
     fh08793   768 GQ-----FSSlQLVAMQRGVAAAMQYLSSFAFVHRSLSAHSVLVNShlVC 812  

                   KlaDFGlArql...ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE
                   K     +Ar+ +++      + + APEv+ ++++++ ++D+WS+G++++E
     fh08793   813 K-----VARLGhspQGPSCLLRWAAPEVIahgKHTT-SSDVWSFGILMWE 856  

                   llt.GkpPFp..qldlifkkig...........SpeakdLikklLvkdPe
                    ++ G+ P+++  ++++++ i  + + +++++ +p +  L+   ++kd +
     fh08793   857 VMSyGERPYWdmSEQEVLNAIEqefrlppppgcPPGLHLLMLDTWQKDRA 906  

                   kRlta.eaLedeldikaHPff<-*
                   +R+  +++ ++      +  +   
     fh08793   907 RRPHFdQLVAAF-----DKMI    922  

SM00219: domain 1 of 1, from 673 to 918: score 244.6, E = 8.1e-69
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda....keeF
                      ++ ++++G G FGeV++G+l ++++++++VA+  L ++  ++ ++ F
     fh08793   673    IKIEEVIGTGSFGEVRQGRLQprgrreQTVAIQALWAGGaeslQMTF 719  

                   lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl
                   l  a ++ ++  +HpNi++L Gv+t++        Plm+++E+me+G L+
     fh08793   720 LGRAAVLGQF--QHPNILRLEGVVTKS-------RPLMVLTEFMELGPLD 760  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                   ++Lr +++++s  +L+ +   +A+ M+YL+s  fvHR L A  +Lv++ +
     fh08793   761 SFLRQREGQFSSLQLVAMQRGVAAAMQYLSSFAFVHRSLSAHSVLVNSHL 810  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                   v+K+     +R +++                 +g +   +rW APE++ +
     fh08793   811 VCKV-----ARLGHSP----------------QGPS-CLLRWAAPEVIAH 838  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                   gk t+ SDVWSFG+l+WE++++Ge PY++     ms +evl+ +++ +Rl
     fh08793   839 GKHTTSSDVWSFGILMWEVMSYGERPYWD-----MSEQEVLNAIEQEFRL 883  

                   pkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   p+P+         CP+ l+ lMl+ W+ d + RP F +lv  +   
     fh08793   884 PPPPG--------CPPGLHLLMLDTWQKDRARRPHFDQLVAAF    918  

SM00454: domain 1 of 1, from 948 to 1015: score 70.3, E = 2.5e-16
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       + ++ +s ++WL +igle Y dnF+k g+ ++  ++++s+edL  l
     fh08793   948    LDfPCLDSPQAWLSAIGLECYQDNFSKFGLCTFSDVAQLSLEDLPAL 994  

                   GitllGhRkkIlsaiqklkeq<-*
                   Gitl+Gh+kk+l+ iq l+++   
     fh08793   995 GITLAGHQKKLLHHIQLLQQH    1015 

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