hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-13254010/chunk_1/iprscan-20080809-13254010.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh08818 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00400.22.ls WD domain, G-beta repeat 154.4 2.8e-43 6 PF00400.22.fs WD domain, G-beta repeat 143.0 7.4e-40 6 PF00096.16.fs Zinc finger, C2H2 type 23.9 0.0001 3 PF00096.16.ls Zinc finger, C2H2 type 26.2 0.00011 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 1/6 786 822 .. 1 38 [] 28.8 3.9e-07 PF00400.22.ls 1/6 786 822 .. 1 38 [] 30.7 4.8e-06 PF00400.22.fs 2/6 826 867 .. 1 38 [] 32.2 4.3e-08 PF00400.22.ls 2/6 826 867 .. 1 38 [] 34.2 4.3e-07 PF00400.22.fs 3/6 912 951 .. 1 38 [] 14.7 0.0036 PF00400.22.ls 4/6 955 991 .. 1 38 [] 27.5 4.3e-05 PF00400.22.fs 4/6 955 991 .. 1 38 [] 25.6 3e-06 PF00400.22.ls 5/6 995 1031 .. 1 38 [] 25.4 0.00019 PF00400.22.fs 5/6 995 1031 .. 1 38 [] 23.5 1.2e-05 PF00400.22.fs 6/6 1035 1067 .. 1 34 [. 18.3 0.00035 PF00096.16.ls 2/3 1078 1103 .. 1 24 [] 20.0 0.008 Alignments of top-scoring domains: PF00400.22.fs: domain 1 of 6, from 786 to 822: score 28.8, E = 3.9e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++gH+++V+++ + + ll ++S+D+t+++++ fh08818 786 EPTEgSFeGHQAAVNAIQIFGN---LLYTCSADKTVRVYN 822 PF00400.22.ls: domain 1 of 6, from 786 to 822: score 30.7, E = 4.8e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++gH+++V+++ + + ll ++S+D+t+++++ fh08818 786 EPTEgSFeGHQAAVNAIQIFGN---LLYTCSADKTVRVYN 822 PF00400.22.fs: domain 2 of 6, from 826 to 867: score 32.2, E = 4.3e-08 *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-* ++c++v++gHts V+c+ + + ++ l +gS+D+ti+ ++ fh08818 826 RKCIgVFeGHTSKVNCLLVTQTsgKNAALYTGSSDHTIRCYN 867 PF00400.22.ls: domain 2 of 6, from 826 to 867: score 34.2, E = 4.3e-07 *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-* ++c++v++gHts V+c+ + + ++ l +gS+D+ti+ ++ fh08818 826 RKCIgVFeGHTSKVNCLLVTQTsgKNAALYTGSSDHTIRCYN 867 PF00400.22.fs: domain 3 of 6, from 912 to 951: score 14.7, E = 0.0036 *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-* + + + +g +V+c+a ++++ ++ll+ gS D+ti + d fh08818 912 RLEIfEChGP-RAVSCLATAQEgARKLLVVGSYDCTISVRD 951 PF00400.22.ls: domain 4 of 6, from 955 to 991: score 27.5, E = 4.3e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g ++++l+gH++t+ c++++ d l++sgS+D +++ + fh08818 955 GLLLrTLeGHSKTILCMKVVND---LVFSGSSDQSVHAHN 991 PF00400.22.fs: domain 4 of 6, from 955 to 991: score 25.6, E = 3e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g ++++l+gH++t+ c++++ d l++sgS+D +++ + fh08818 955 GLLLrTLeGHSKTILCMKVVND---LVFSGSSDQSVHAHN 991 PF00400.22.ls: domain 5 of 6, from 995 to 1031: score 25.4, E = 0.00019 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ge++++++gH+++Vt v + ++++++ D+ +++++ fh08818 995 GELVrIYkGHNHAVTVVNILGK---VMVTACLDKFVRVYE 1031 PF00400.22.fs: domain 5 of 6, from 995 to 1031: score 23.5, E = 1.2e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ge++++++gH+++Vt v + ++++++ D+ +++++ fh08818 995 GELVrIYkGHNHAVTVVNILGK---VMVTACLDKFVRVYE 1031 PF00400.22.fs: domain 6 of 6, from 1035 to 1067: score 18.3, E = 0.00035 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgti<-* + ++v++gH++ ++c+ ++ + ++ +g+ Dg+i fh08818 1035 HDRLqVYgGHKDMIMCMTIHKS---MIYTGCYDGSI 1067 PF00096.16.ls: domain 2 of 3, from 1078 to 1103: score 20.0, E = 0.008 *->ykCpf.dCgksFsrksnLkrHlrt.H<-* y+C +++C F ++Lk+Hl t+H fh08818 1078 YRCWWhGCSLIFGVVDHLKQHLLTdH 1103 //