hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-13254010/chunk_1/iprscan-20080809-13254010.nocrc
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Query sequence: fh08818
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00320                                                 152.6      4e-41   6
SM00355                                                  38.1    1.2e-06   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3      42    66 ..     1    23 []    18.4     0.99
SM00320      1/6     785   822 ..     1    46 []    30.5  0.00023
SM00320      2/6     825   867 ..     1    46 []    34.6  1.4e-05
SM00320      3/6     909   951 ..     1    46 []    17.6     0.81
SM00320      4/6     954   991 ..     1    46 []    26.0   0.0053
SM00320      5/6     994  1031 ..     1    46 []    25.0     0.01
SM00320      6/6    1034  1071 ..     1    46 []    18.9     0.49
SM00355      2/3    1078  1103 ..     1    23 []    19.6     0.45
SM00355      3/3    1111  1139 ..     1    23 []     0.1  3.1e+02

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 42 to 66: score 18.4, E = 0.99
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                       kC + C+ ++ssk+++ +Hmr+  H   
     fh08818    42    RKCIL-CHIVYSSKkEMDEHMRsmLH    66   

SM00320: domain 1 of 6, from 785 to 822: score 30.5, E = 0.00023
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +     +++gH++  +V+++++  +        ll+++s D+t+r++
     fh08818   785    DePTEGSFEGHQA--AVNAIQIFGN--------LLYTCSaDKTVRVY 821  

                   d<-*
                   +   
     fh08818   822 N    822  

SM00320: domain 2 of 6, from 825 to 867: score 34.6, E = 1.4e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k++ +++gHt+   V+++ + +++g+   +  l++gs+D+tir++
     fh08818   825    SrKCIGVFEGHTS--KVNCLLVTQTSGK---NAALYTGSsDHTIRCY 866  

                   d<-*
                   +   
     fh08818   867 N    867  

SM00320: domain 3 of 6, from 909 to 951: score 17.6, E = 0.81
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k l ++++H    +V+++a  + g      +ll++gs D+ti + 
     fh08818   909    NnKRLEIFECHGP-RAVSCLATAQEGAR----KLLVVGSyDCTISVR 950  

                   d<-*
                   d   
     fh08818   951 D    951  

SM00320: domain 4 of 6, from 954 to 991: score 26.0, E = 0.0053
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ llrtl+gH++   ++++++  d        l++sgs+D +++  
     fh08818   954    NgLLLRTLEGHSK--TILCMKVVND--------LVFSGSsDQSVHAH 990  

                   d<-*
                   +   
     fh08818   991 N    991  

SM00320: domain 5 of 6, from 994 to 1031: score 25.0, E = 0.01
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++l+r++kgH++  +Vt v +           ++++++ D+ +r++
     fh08818   994    TgELVRIYKGHNH--AVTVVNILGK--------VMVTAClDKFVRVY 1030 

                   d<-*
                   +   
     fh08818  1031 E    1031 

SM00320: domain 6 of 6, from 1034 to 1071: score 18.9, E = 0.49
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  l+++ gH++   + +++++ +        ++++g+ Dg+i   
     fh08818  1034    ShDRLQVYGGHKD--MIMCMTIHKS--------MIYTGCyDGSIQAV 1070 

                   d<-*
                       
     fh08818  1071 R    1071 

SM00355: domain 2 of 3, from 1078 to 1103: score 19.6, E = 0.45
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      y+C ++gC+  f   ++Lk+H+ + H   
     fh08818  1078    YRCWWhGCSLIFGVVdHLKQHLLtDH    1103 

SM00355: domain 3 of 3, from 1111 to 1139: score 0.1, E = 3.1e+02
                   *->ykCpi.gCg....ksfssk.aLkrHmrvH<-*
                      +kC +++C+   + +  sk++   H+ +H   
     fh08818  1111    LKCRWkNCDafftARKGSKqDAAGHIERH    1139 

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