hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-13463538/chunk_1/iprscan-20080809-13463538.nocrc
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Query sequence: fh09182
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05760.2.fs Immediate early response protein (IER)         709.4   2.5e-236   1
PF05760.2.ls Immediate early response protein (IER)         711.1   7.1e-211   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05760.2.fs   1/1      36   362 .]     1   431 []   709.4 2.5e-236
PF05760.2.ls   1/1      36   362 .]     1   431 []   711.1 7.1e-211

Alignments of top-scoring domains:
PF05760.2.fs: domain 1 of 1, from 36 to 362: score 709.4, E = 2.5e-236
                   *->MEvklEAqRImSISLgKIYnSRvQRGGIKLHKNLLVSLVLRSARqlY
                      ME+klEA+RI+SISLgKIYnSRvQRGGIKLHKNLLVSLVLRSARq+Y
     fh09182    36    MEFKLEAHRIVSISLGKIYNSRVQRGGIKLHKNLLVSLVLRSARQVY 82   

                   LSdkypgLYlagqagtpaqPPheqeghlaaapPSgwgepPPsaaraddpe
                   LSd++pgLYlag+agtpa+PP++q+g++aa+pP+gwgepPP+aara++pe
     fh09182    83 LSDPCPGLYLAGPAGTPAPPPQQQPGEPAAGPPAGWGEPPPPAARASWPE 132  

                   lggggdpqPeePsvrhqLHqLHqLHqLHLqqqLHqHqHPAPreaesapva
                   +    +pqPe++sv+++                       Pr+++++pva
     fh09182   133 T----EPQPERSSVSDA-----------------------PRVGDEVPVA 155  

                   aVaGagaglaGgesElaeaaaeqpEhprdtsgeeleslqggpalfpeppr
                   +V+G+g++++Gge++++eaa++++E+pr+++++e+e+++gg+++fpe++r
     fh09182   156 TVTGVGDVFQGGEADATEAAWSRVEGPRQAAAREAEGTAGGWGVFPEVSR 205  

                   aaerPcdcrvaeedSaPsVlPgAaP..stvaAsrssedtaPspsavFYRG
                   aa+rPc+c++++ed  P+++P+A+P+ ++++A+r++ed++P+p+av    
     fh09182   206 AARRPCGCPLGGED--PPGTPAATPraACCCAPRPAEDEPPAPPAV---- 249  

                   AYPAPSDFGVHCSSqttVLDLDtHVVttVENGYLHqDlCpskrCaagvgG
                                                         Cp+krCaagvgG
     fh09182   250 --------------------------------------CPRKRCAAGVGG 261  

                   asaeesasgatGLvpkkKprRNvessPlqeEedeeEeaGDLGAEPPGGtP
                   ++a+++a+g+t   p+kKprRN+e++P+++E+d++Ee+            
     fh09182   262 GPAGCPAPGST---PLKKPRRNLEQPPSGGEDDDAEEM------------ 296  

                   FAPCKrarveDlcPdsspdtGNvsNLIsIfGSsFSGLLskSPAGGREEEe
                                     +tGNv+NLIsIfGSsFSGLL+kSP+GGREEEe
     fh09182   297 ------------------ETGNVANLISIFGSSFSGLLRKSPGGGREEEE 328  

                   peesepeApepgqiCRPadqPaLndLnpWsrAIVAF<-*
                   +ees+peA+epgqiC  +d+P+L+d+npWs+AIVAF   
     fh09182   329 GEESGPEAAEPGQIC--CDKPVLRDMNPWSTAIVAF    362  

PF05760.2.ls: domain 1 of 1, from 36 to 362: score 711.1, E = 7.1e-211
                   *->MEvklEAqRImSISLgKIYnSRvQRGGIKLHKNLLVSLVLRSARqlY
                      ME+klEA+RI+SISLgKIYnSRvQRGGIKLHKNLLVSLVLRSARq+Y
     fh09182    36    MEFKLEAHRIVSISLGKIYNSRVQRGGIKLHKNLLVSLVLRSARQVY 82   

                   LSdkypgLYlagqagtpaqPPheqeghlaaapPSgwgepPPsaaraddpe
                   LSd++pgLYlag+agtpa+PP++q+g++aa+pP+gwgepPP+aara++pe
     fh09182    83 LSDPCPGLYLAGPAGTPAPPPQQQPGEPAAGPPAGWGEPPPPAARASWPE 132  

                   lggggdpqPeePsvrhqLHqLHqLHqLHLqqqLHqHqHPAPreaesapva
                   +    +pqPe++sv+++                       Pr+++++pva
     fh09182   133 T----EPQPERSSVSDA-----------------------PRVGDEVPVA 155  

                   aVaGagaglaGgesElaeaaaeqpEhprdtsgeeleslqggpalfpeppr
                   +V+G+g++++Gge++++eaa++++E+pr+++++e+e+++gg+++fpe++r
     fh09182   156 TVTGVGDVFQGGEADATEAAWSRVEGPRQAAAREAEGTAGGWGVFPEVSR 205  

                   aaerPcdcrvaeedSaPsVlPgAaP..stvaAsrssedtaPspsavFYRG
                   aa+rPc+c++++ed  P+++P+A+P+ ++++A+r++ed++P+p+av    
     fh09182   206 AARRPCGCPLGGED--PPGTPAATPraACCCAPRPAEDEPPAPPAV---- 249  

                   AYPAPSDFGVHCSSqttVLDLDtHVVttVENGYLHqDlCpskrCaagvgG
                                                         Cp+krCaagvgG
     fh09182   250 --------------------------------------CPRKRCAAGVGG 261  

                   asaeesasgatGLvpkkKprRNvessPlqeEedeeEeaGDLGAEPPGGtP
                   ++a+++a+g+t   p+kKprRN+e++P+++E+d++Ee+            
     fh09182   262 GPAGCPAPGST---PLKKPRRNLEQPPSGGEDDDAEEM------------ 296  

                   FAPCKrarveDlcPdsspdtGNvsNLIsIfGSsFSGLLskSPAGGREEEe
                                     +tGNv+NLIsIfGSsFSGLL+kSP+GGREEEe
     fh09182   297 ------------------ETGNVANLISIFGSSFSGLLRKSPGGGREEEE 328  

                   peesepeApepgqiCRPadqPaLndLnpWsrAIVAF<-*
                   +ees+peA+epgqiC  +d+P+L+d+npWs+AIVAF   
     fh09182   329 GEESGPEAAEPGQIC--CDKPVLRDMNPWSTAIVAF    362  

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