hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-13532162/chunk_1/iprscan-20080809-13532162.nocrc
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Query sequence: fh09317
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
SM00479                                                   4.1     0.0058   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
SM00479       1/1      10   138 ..     1   196 []     4.1   0.0058

Alignments of top-scoring domains:
SM00479: domain 1 of 1, from 10 to 138: score 4.1, E = 0.0058
                   *->tlvviDcEtTGpdnegeldpgdeiiEiaaVdvdg.evfdtlVkPddr
                               TG               i a + +g +   ++ +P   
     fh09317    10    ---------TG---------------IHASIGQGfSGRVSC-QP--- 28   

                   pipdyateihGSIteemlddgrsaaptfeeVleelleflkgsippgkegv
                             G +  +  d++            ++l++lkg++       
     fh09317    29 ---------DG-VWGDLPDSS---------FCSQILKLLKGKV------- 52   

                   clvagNsanfDlrfLklehprlglkeppknpflviDTadlaktlklarkl
                     v+g+++++D+++Lk+ hpr          ++++DT        + +  
     fh09317    53 --VVGHALHNDFQALKYVHPR----------SQTRDT-------TYVPNF 83   

                   fpglpkagrrkysLkkLaerlgleviq.....HrAldDArataklfkkll
                   ++ ++  +r ++sLk La  l+++ iq ++++H++++DA ++++l++ + 
     fh09317    84 LSEPGLHTRARVSLKDLALQLLHKKIQvgqhgHSSVEDATTAMELYRLVE 133  

                   erlae<-*
                    ++++   
     fh09317   134 VQWEQ    138  

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