# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh10640.fasta.nr -Q fh10640.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh10640, 166 aa vs /cdna2/lib/nr/nr library 2779448989 residues in 8089198 sequences statistics sampled from 60000 to 8088879 sequences Expectation_n fit: rho(ln(x))= 4.9354+/-0.000182; mu= 8.2101+/- 0.010 mean_var=66.0900+/-13.073, 0's: 35 Z-trim: 39 B-trim: 2038 in 1/64 Lambda= 0.157763 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8089198) gi|211830711|gb|AAH47044.2| USP47 protein [Homo sa ( 436) 1064 250.5 2.4e-64 gi|52545855|emb|CAH56337.1| hypothetical protein [ ( 746) 1064 250.6 3.6e-64 gi|18676500|dbj|BAB84902.1| FLJ00147 protein [Homo ( 772) 1064 250.6 3.7e-64 gi|119588949|gb|EAW68543.1| ubiquitin specific pep ( 883) 1064 250.7 4.1e-64 gi|7021006|dbj|BAA91348.1| unnamed protein product ( 347) 1059 249.2 4.4e-64 gi|119588950|gb|EAW68544.1| ubiquitin specific pep (1177) 1064 250.8 5.1e-64 gi|119588948|gb|EAW68542.1| ubiquitin specific pep (1181) 1064 250.8 5.1e-64 gi|114636202|ref|XP_001171037.1| PREDICTED: ubiqui (1275) 1064 250.8 5.5e-64 gi|193785314|dbj|BAG54467.1| unnamed protein produ (1287) 1064 250.8 5.5e-64 gi|151555069|gb|AAI48588.1| Ubiquitin specific pep (1287) 1064 250.8 5.5e-64 gi|14041989|dbj|BAB55063.1| unnamed protein produc (1287) 1064 250.8 5.5e-64 gi|114636196|ref|XP_001171056.1| PREDICTED: ubiqui (1287) 1064 250.8 5.5e-64 gi|114636192|ref|XP_001171097.1| PREDICTED: ubiqui (1355) 1064 250.8 5.7e-64 gi|114636190|ref|XP_001171078.1| PREDICTED: ubiqui (1375) 1064 250.8 5.8e-64 gi|68566222|sp|Q96K76.2|UBP47_HUMAN RecName: Full= (1375) 1064 250.8 5.8e-64 gi|109107296|ref|XP_001098399.1| PREDICTED: ubiqui (1287) 1058 249.4 1.4e-63 gi|109107294|ref|XP_001098898.1| PREDICTED: ubiqui (1355) 1058 249.4 1.5e-63 gi|109107292|ref|XP_001098793.1| PREDICTED: ubiqui (1375) 1058 249.5 1.5e-63 gi|149068272|gb|EDM17824.1| ubiquitin specific pro ( 164) 1041 244.9 4.2e-63 gi|31891458|gb|AAH00226.2| USP47 protein [Homo sap ( 157) 1038 244.2 6.5e-63 gi|194213848|ref|XP_001501242.2| PREDICTED: simila (1434) 1045 246.5 1.2e-62 gi|151556260|gb|AAI49782.1| Unknown (protein for I ( 555) 1031 243.0 5.2e-62 gi|26352886|dbj|BAC40073.1| unnamed protein produc ( 177) 1023 240.8 7.6e-62 gi|126332479|ref|XP_001379670.1| PREDICTED: simila (1360) 1033 243.8 7.6e-62 gi|59807710|gb|AAH89364.1| Usp47 protein [Mus musc ( 381) 1023 241.1 1.4e-61 gi|189163515|ref|NP_001101012.2| ubiquitin specifi (1355) 1027 242.4 2e-61 gi|27881595|gb|AAH24117.1| Usp47 protein [Mus musc ( 698) 1023 241.3 2.2e-61 gi|26326871|dbj|BAC27179.1| unnamed protein produc ( 737) 1023 241.3 2.3e-61 gi|47847432|dbj|BAD21388.1| mFLJ00147 protein [Mus ( 982) 1023 241.4 2.9e-61 gi|26326903|dbj|BAC27195.1| unnamed protein produc ( 347) 1017 239.7 3.3e-61 gi|148685070|gb|EDL17017.1| ubiquitin specific pep (1356) 1023 241.5 3.7e-61 gi|80478768|gb|AAI08426.1| Usp47 protein [Mus musc (1376) 1023 241.5 3.7e-61 gi|68566204|sp|Q8BY87.2|UBP47_MOUSE RecName: Full= (1376) 1023 241.5 3.7e-61 gi|224052071|ref|XP_002187546.1| PREDICTED: ubiqui (1630) 1022 241.3 5e-61 gi|118091184|ref|XP_420965.2| PREDICTED: similar t (1376) 1020 240.8 6e-61 gi|148685071|gb|EDL17018.1| ubiquitin specific pep ( 157) 997 234.9 4.2e-60 gi|149632657|ref|XP_001511271.1| PREDICTED: simila (1458) 990 234.0 7.1e-59 gi|55249607|gb|AAH86278.1| LOC495686 protein [Xeno (1350) 911 216.0 1.7e-53 gi|189538037|ref|XP_699037.3| PREDICTED: wu:fc25f0 ( 766) 904 214.2 3.4e-53 gi|118763560|gb|AAI28637.1| LOC100036690 protein [ (1354) 898 213.0 1.4e-52 gi|47204786|emb|CAF91182.1| unnamed protein produc ( 266) 878 208.0 8.9e-52 gi|47230431|emb|CAF99624.1| unnamed protein produc (1304) 878 208.5 3.1e-51 gi|118142878|gb|AAH17795.1| USP47 protein [Homo sa ( 331) 792 188.5 8.3e-46 gi|210131310|gb|EEA78979.1| hypothetical protein B (1318) 702 168.4 3.6e-39 gi|210124662|gb|EEA72357.1| hypothetical protein B (1326) 702 168.4 3.6e-39 gi|114636194|ref|XP_001171018.1| PREDICTED: ubiqui (1297) 662 159.3 1.9e-36 gi|15215261|gb|AAH12722.1| Usp47 protein [Mus musc ( 78) 483 117.7 4e-25 gi|91079889|ref|XP_968047.1| PREDICTED: similar to (1307) 466 114.7 5.2e-23 gi|114636198|ref|XP_001170938.1| PREDICTED: ubiqui (1293) 369 92.6 2.3e-16 gi|167880813|gb|EDS44196.1| ubiquitin carboxyl-ter (1142) 362 91.0 6.3e-16 >>gi|211830711|gb|AAH47044.2| USP47 protein [Homo sapien (436 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1311.8 bits: 250.5 E(): 2.4e-64 Smith-Waterman score: 1064; 97.561% identity (98.780% similar) in 164 aa overlap (3-166:273-436) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|211 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 250 260 270 280 290 300 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|211 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 310 320 330 340 350 360 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|211 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 370 380 390 400 410 420 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|211 IYLDGAPNKDLTQD 430 >>gi|52545855|emb|CAH56337.1| hypothetical protein [Homo (746 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1308.5 bits: 250.6 E(): 3.6e-64 Smith-Waterman score: 1064; 97.561% identity (98.780% similar) in 164 aa overlap (3-166:583-746) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|525 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 560 570 580 590 600 610 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|525 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 620 630 640 650 660 670 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|525 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 680 690 700 710 720 730 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|525 IYLDGAPNKDLTQD 740 >>gi|18676500|dbj|BAB84902.1| FLJ00147 protein [Homo sap (772 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1308.3 bits: 250.6 E(): 3.7e-64 Smith-Waterman score: 1064; 97.561% identity (98.780% similar) in 164 aa overlap (3-166:609-772) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|186 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 580 590 600 610 620 630 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|186 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 640 650 660 670 680 690 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 700 710 720 730 740 750 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|186 IYLDGAPNKDLTQD 760 770 >>gi|119588949|gb|EAW68543.1| ubiquitin specific peptida (883 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1307.5 bits: 250.7 E(): 4.1e-64 Smith-Waterman score: 1064; 97.561% identity (98.780% similar) in 164 aa overlap (3-166:720-883) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|119 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 690 700 710 720 730 740 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|119 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 750 760 770 780 790 800 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 810 820 830 840 850 860 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|119 IYLDGAPNKDLTQD 870 880 >>gi|7021006|dbj|BAA91348.1| unnamed protein product [Ho (347 aa) initn: 1059 init1: 1059 opt: 1059 Z-score: 1307.0 bits: 249.2 E(): 4.4e-64 Smith-Waterman score: 1059; 96.951% identity (98.780% similar) in 164 aa overlap (3-166:184-347) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|702 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 160 170 180 190 200 210 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|702 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 220 230 240 250 260 270 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|702 NVWPLYICDDGGVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 280 290 300 310 320 330 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|702 IYLDGAPNKDLTQD 340 >>gi|119588950|gb|EAW68544.1| ubiquitin specific peptida (1177 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1305.8 bits: 250.8 E(): 5.1e-64 Smith-Waterman score: 1064; 97.561% identity (98.780% similar) in 164 aa overlap (3-166:1014-1177) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|119 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 990 1000 1010 1020 1030 1040 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|119 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 1050 1060 1070 1080 1090 1100 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 1110 1120 1130 1140 1150 1160 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|119 IYLDGAPNKDLTQD 1170 >>gi|119588948|gb|EAW68542.1| ubiquitin specific peptida (1181 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1305.8 bits: 250.8 E(): 5.1e-64 Smith-Waterman score: 1064; 97.561% identity (98.780% similar) in 164 aa overlap (3-166:1018-1181) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|119 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 990 1000 1010 1020 1030 1040 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|119 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 1050 1060 1070 1080 1090 1100 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 1110 1120 1130 1140 1150 1160 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|119 IYLDGAPNKDLTQD 1170 1180 >>gi|114636202|ref|XP_001171037.1| PREDICTED: ubiquitin (1275 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1305.3 bits: 250.8 E(): 5.5e-64 Smith-Waterman score: 1064; 97.561% identity (98.780% similar) in 164 aa overlap (3-166:1112-1275) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|114 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 1090 1100 1110 1120 1130 1140 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|114 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 1150 1160 1170 1180 1190 1200 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 1210 1220 1230 1240 1250 1260 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|114 IYLDGAPNKDLTQD 1270 >>gi|193785314|dbj|BAG54467.1| unnamed protein product [ (1287 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1305.2 bits: 250.8 E(): 5.5e-64 Smith-Waterman score: 1064; 97.561% identity (98.780% similar) in 164 aa overlap (3-166:1124-1287) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|193 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 1100 1110 1120 1130 1140 1150 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|193 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 1160 1170 1180 1190 1200 1210 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 1220 1230 1240 1250 1260 1270 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|193 IYLDGAPNKDLTQD 1280 >>gi|151555069|gb|AAI48588.1| Ubiquitin specific peptida (1287 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1305.2 bits: 250.8 E(): 5.5e-64 Smith-Waterman score: 1064; 97.561% identity (98.780% similar) in 164 aa overlap (3-166:1124-1287) 10 20 30 fh1064 SCIFLGVEKMKSMSQLAVLSRRWKPSEMKLDP .. ::::::::::::::::::::::::::: gi|151 TWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDP 1100 1110 1120 1130 1140 1150 40 50 60 70 80 90 fh1064 FQEVVLESSSVDELREKLSEISGIPLDDTEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|151 FQEVVLESSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTL 1160 1170 1180 1190 1200 1210 100 110 120 130 140 150 fh1064 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 NVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALK 1220 1230 1240 1250 1260 1270 160 fh1064 IYLDGAPNKDLTQD :::::::::::::: gi|151 IYLDGAPNKDLTQD 1280 166 residues in 1 query sequences 2779448989 residues in 8089198 library sequences Tcomplib [34.26] (8 proc) start: Thu Apr 16 14:11:41 2009 done: Thu Apr 16 14:15:08 2009 Total Scan time: 704.220 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]