hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-14265979/chunk_1/iprscan-20080809-14265979.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh11147 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00041.11.ls Fibronectin type III domain 182.5 9.5e-52 4 PF00041.11.fs Fibronectin type III domain 174.5 1.9e-49 4 PF07679.6.fs Immunoglobulin I-set domain 148.0 1.4e-42 6 PF00047.15.ls Immunoglobulin domain 128.9 1.3e-35 5 PF07679.6.ls Immunoglobulin I-set domain 124.1 3.7e-34 4 PF00047.15.fs Immunoglobulin domain 119.6 8.2e-33 5 PF07686.7.fs Immunoglobulin V-set domain 50.8 8e-14 4 PF07686.7.ls Immunoglobulin V-set domain 35.7 1.4e-07 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/4 37 129 .. 1 96 [] 10.7 0.00014 PF07679.6.fs 1/6 58 98 .. 21 68 .. 21.1 1.5e-05 PF07686.7.ls 1/3 243 330 .. 1 141 [] 10.9 0.0039 PF07679.6.ls 2/4 243 329 .. 1 96 [] 45.6 1.5e-10 PF07679.6.fs 3/6 250 329 .. 8 96 .] 43.9 3.3e-12 PF00047.15.ls 2/5 257 314 .. 1 65 [] 29.7 9.3e-06 PF00047.15.fs 2/5 257 314 .. 1 65 [] 27.9 6.7e-07 PF07679.6.ls 3/4 333 420 .. 1 96 [] 28.5 4.5e-06 PF07679.6.fs 4/6 333 373 .. 1 41 [. 27.2 2.4e-07 PF00047.15.fs 3/5 347 405 .. 1 65 [] 32.4 3.8e-08 PF00047.15.ls 3/5 347 405 .. 1 65 [] 34.3 4e-07 PF07679.6.ls 4/4 425 513 .. 1 96 [] 39.2 1.3e-08 PF07679.6.fs 5/6 439 513 .. 14 96 .] 38.0 1.8e-10 PF00047.15.fs 4/5 440 498 .. 1 65 [] 36.3 3.2e-09 PF00047.15.ls 4/5 440 498 .. 1 65 [] 38.2 2.6e-08 PF07686.7.ls 3/3 516 611 .. 1 141 [] 23.0 0.00024 PF00047.15.ls 5/5 531 595 .. 1 65 [] 18.2 0.027 PF00047.15.fs 5/5 531 595 .. 1 65 [] 16.3 0.001 PF07686.7.fs 4/4 576 611 .. 105 141 .] 25.2 1.2e-06 PF00041.11.fs 1/4 614 700 .. 1 84 [] 66.4 2e-18 PF00041.11.ls 1/4 614 700 .. 1 84 [] 68.4 2.1e-17 PF00041.11.ls 2/4 713 799 .. 1 84 [] 29.7 9.3e-06 PF00041.11.fs 2/4 713 799 .. 1 84 [] 27.7 2.5e-07 PF00041.11.fs 3/4 811 906 .. 1 84 [] 27.4 3.2e-07 PF00041.11.ls 3/4 811 906 .. 1 84 [] 29.4 1.2e-05 PF00041.11.ls 4/4 918 1007 .. 1 84 [] 55.0 2.3e-13 PF00041.11.fs 4/4 918 1007 .. 1 84 [] 53.0 1.4e-14 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 4, from 37 to 129: score 10.7, E = 0.00014 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P+++++ + v e eC+++G+PePt sW+KdG p + fh11147 37 PTIIKQSkVQVAFPFDEYFQIECEAKGNPEPTFSWTKDGNPFYF--T 81 psdrfkvtydgGsgtytLtIsn..vqpdDsGkYtCvAtNsaGea.easae + +++ ++ + t++I+n++ + GkY+C A+N+ G a + ++e fh11147 82 D---HRIIPSN--NSGTFRIPNegHISHFQGKYRCFASNKLGIAmSEEIE 126 LtV<-* +V fh11147 127 FIV 129 PF07679.6.fs: domain 1 of 6, from 58 to 98: score 21.1, E = 1.5e-05 *->eCkVtGtPePtVsWfKdGqplssvllpsdrfkvtydgGsgtytLtIs eC+++G+PePt sW+KdG p ++ +++ ++ + t++I+ fh11147 58 ECEAKGNPEPTFSWTKDGNPFYF--TD---HRIIPSN--NSGTFRIP 97 n<-* n fh11147 98 N 98 PF07686.7.ls: domain 1 of 3, from 243 to 330: score 10.9, E = 0.0039 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + + ++ s+t G+ ++L C+ +++ fh11147 243 PTESGS--ES------------SITILKGEILLLECFAE---GLP-- 270 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ ++ W + g+ kgr fh11147 271 --TP-QVDWNK--------------------------IGGDLPKGREA-- 289 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++ +L+I n++ D G Y C sn+ ++ + +++V+ fh11147 290 --KENYGKTLKIENVSYQDKGNYRCTASNF-LGTATHDFHVIVE 330 PF07679.6.ls: domain 2 of 4, from 243 to 329: score 45.6, E = 1.5e-10 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ + +++++ Ge + +eC ++G P+P+V W K G +l+ fh11147 243 PTESGSESSITILKGEILLLECFAEGLPTPQVDWNKIGGDLPK---- 285 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< + ++ + tL+I nv D G Y+C+A+N G+a+ +++++V fh11147 286 ---GREAKEN--YGKTLKIENVSYQDKGNYRCTASNFLGTATHDFHVIV 329 -* fh11147 - - PF07679.6.fs: domain 3 of 6, from 250 to 329: score 43.9, E = 3.3e-12 *->kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvt +++++ Ge + +eC ++G P+P+V W K G +l+ + fh11147 250 SSITILKGEILLLECFAEGLPTPQVDWNKIGGDLPK-------GREA 289 ydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* ++ + tL+I nv D G Y+C+A+N G+a+ +++++V fh11147 290 KEN--YGKTLKIENVSYQDKGNYRCTASNFLGTATHDFHVIV 329 PF00047.15.ls: domain 2 of 5, from 257 to 314: score 29.7, E = 9.3e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge + L C + +g p ++v W + g++l++g ++++ ++ fh11147 257 GEILLLECFA--EGLPTPQVDWNKIGGdLPkGREAKENYGKT----- 296 tsLtitnvtpeDggtYtCvv<-* L i nv+++D g+Y+C++ fh11147 297 --LKIENVSYQDKGNYRCTA 314 PF00047.15.fs: domain 2 of 5, from 257 to 314: score 27.9, E = 6.7e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge + L C + +g p ++v W + g++l++g ++++ ++ fh11147 257 GEILLLECFA--EGLPTPQVDWNKIGGdLPkGREAKENYGKT----- 296 tsLtitnvtpeDggtYtCvv<-* L i nv+++D g+Y+C++ fh11147 297 --LKIENVSYQDKGNYRCTA 314 PF07679.6.ls: domain 3 of 4, from 333 to 420: score 28.5, E = 4.5e-06 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvl.l P+ t+kp++++ + G+ + C+++G+P+Pt+ W +G+p+ + + fh11147 333 PRWTKKPQSAVYSTGSNGILLCEAEGEPQPTIKWRVNGSPVDN-HpF 378 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV v++ + n qp +Y C A+N G+ a a+ V fh11147 379 A---GDVVFPR-----EISFTNLQPNHTAVYQCEASNVHGTILANANIDV 420 <-* fh11147 - - PF07679.6.fs: domain 4 of 6, from 333 to 373: score 27.2, E = 2.4e-07 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqpl<-* P+ t+kp++++ + G+ + C+++G+P+Pt+ W +G+p+ fh11147 333 PRWTKKPQSAVYSTGSNGILLCEAEGEPQPTIKWRVNGSPV 373 PF00047.15.fs: domain 3 of 5, from 347 to 405: score 32.4, E = 3.8e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty G+ L C++ +g p++t+ W++ng ++ ++ +++++ ++ fh11147 347 GSNGILLCEA--EGEPQPTIKWRVNGSpVDnHPFAGdVVFPRE---- 387 qtsLtitnvtpeDggtYtCvv<-* ++tn++p+++++Y C++ fh11147 388 ---ISFTNLQPNHTAVYQCEA 405 PF00047.15.ls: domain 3 of 5, from 347 to 405: score 34.3, E = 4e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty G+ L C++ +g p++t+ W++ng ++ ++ +++++ ++ fh11147 347 GSNGILLCEA--EGEPQPTIKWRVNGSpVDnHPFAGdVVFPRE---- 387 qtsLtitnvtpeDggtYtCvv<-* ++tn++p+++++Y C++ fh11147 388 ---ISFTNLQPNHTAVYQCEA 405 PF07679.6.ls: domain 4 of 4, from 425 to 513: score 39.2, E = 1.3e-08 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvl P + +k +++ +G sa++ C+ +Pe VsW K + + + fh11147 425 PLIQTKDgENYATVVGYSAFLHCEFFASPEAVVSWQKVeEVKPLE-- 469 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt ++r+++ ++g tL I++ + +D+G Y+C ++N G+ ++a+L fh11147 470 --GRRYHIYENG-----TLQINRTTEEDAGSYSCWVENAIGKTAVTANLD 512 V<-* + fh11147 513 I 513 PF07679.6.fs: domain 5 of 6, from 439 to 513: score 38.0, E = 1.8e-10 *->eGesarfeCkVtGtPePtVsWfKd.GqplssvllpsdrfkvtydgGs +G sa++ C+ +Pe VsW K + + + ++r+++ ++g fh11147 439 VGYSAFLHCEFFASPEAVVSWQKVeEVKPLE----GRRYHIYENG-- 479 gtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* tL I++ + +D+G Y+C ++N G+ ++a+L + fh11147 480 ---TLQINRTTEEDAGSYSCWVENAIGKTAVTANLDI 513 PF00047.15.fs: domain 4 of 5, from 440 to 498: score 36.3, E = 3.2e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G s+ L C+ f++p++ v+W++ ++ + + + +ng+ fh11147 440 GYSAFLHCEF--FASPEAVVSWQKVEEvKPlEGRRYHIYENGT---- 480 tsLtitnvtpeDggtYtCvv<-* L+i+++t+eD+g+Y+C v fh11147 481 --LQINRTTEEDAGSYSCWV 498 PF00047.15.ls: domain 4 of 5, from 440 to 498: score 38.2, E = 2.6e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G s+ L C+ f++p++ v+W++ ++ + + + +ng+ fh11147 440 GYSAFLHCEF--FASPEAVVSWQKVEEvKPlEGRRYHIYENGT---- 480 tsLtitnvtpeDggtYtCvv<-* L+i+++t+eD+g+Y+C v fh11147 481 --LQINRTTEEDAGSYSCWV 498 PF07686.7.ls: domain 3 of 3, from 516 to 611: score 23.0, E = 0.00024 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + + +p+ + + +++L+C + ds+ fh11147 516 ATKLRV-SPK------------NPRIPKLHMLELHCESK---CDSHL 546 ssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtl + ++W++++ + + gr+ fh11147 547 KHSL-KLSWSKDgEAF----------------------EINGTEDGRII- 572 sgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++ ++LtIsn++l+D G+Y C + ++ t++tVl fh11147 573 ---ID--GANLTISNVTLEDQGIYCCSAHTA-LDSAADITQVTVL 611 PF00047.15.ls: domain 5 of 5, from 531 to 595: score 18.2, E = 0.027 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst +++ L C+++ +++ + +++W ++g + + + ++ fh11147 531 LHMLELHCESKcdSHLKHSLKLSWSKDGEaFEiNGTEDGRIIIDGAN 577 yqtsLtitnvtpeDggtYtCvv<-* Lti+nvt eD g+Y C + fh11147 578 ----LTISNVTLEDQGIYCCSA 595 PF00047.15.fs: domain 5 of 5, from 531 to 595: score 16.3, E = 0.001 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst +++ L C+++ +++ + +++W ++g + + + ++ fh11147 531 LHMLELHCESKcdSHLKHSLKLSWSKDGEaFEiNGTEDGRIIIDGAN 577 yqtsLtitnvtpeDggtYtCvv<-* Lti+nvt eD g+Y C + fh11147 578 ----LTISNVTLEDQGIYCCSA 595 PF07686.7.fs: domain 4 of 4, from 576 to 611: score 25.2, E = 1.2e-06 *->fsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++LtIsn++l+D G+Y C + ++ t++tVl fh11147 576 ANLTISNVTLEDQGIYCCSAHTA-LDSAADITQVTVL 611 PF00041.11.fs: domain 1 of 4, from 614 to 700: score 66.4, E = 2e-18 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P++P+nl+ +++++ s++l+W++ + n+ i+ Y v+ +k ++++ fh11147 614 PDPPENLHLSERQNRSVRLTWEAGAdHNSNISEYIVEFEGNKEEPGr 660 wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* w elt + + ++ L P ++Y++rV+Avn++G++++S fh11147 661 WEELTRVQGKKTTVILPLAPFVRYQFRVIAVNEVGrSQPS 700 PF00041.11.ls: domain 1 of 4, from 614 to 700: score 68.4, E = 2.1e-17 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P++P+nl+ +++++ s++l+W++ + n+ i+ Y v+ +k ++++ fh11147 614 PDPPENLHLSERQNRSVRLTWEAGAdHNSNISEYIVEFEGNKEEPGr 660 wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* w elt + + ++ L P ++Y++rV+Avn++G++++S fh11147 661 WEELTRVQGKKTTVILPLAPFVRYQFRVIAVNEVGrSQPS 700 PF00041.11.ls: domain 2 of 4, from 713 to 799: score 29.7, E = 9.3e-06 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ P+n++v + ++ ++ + W+p ++ + ngp Y+vt+ +p++ fh11147 713 PdRNPQNIRVQASQPKEMIIKWEPLKsmeQNGPGLEYRVTW-KPQGA 758 ge.wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + +w e tv+++t + + +Y v+VqA+n+ G+Gp fh11147 759 PVeWEEETVTNHT--LRVMTPAVYAPYDVKVQAINQLGsGPDP 799 PF00041.11.fs: domain 2 of 4, from 713 to 799: score 27.7, E = 2.5e-07 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ P+n++v + ++ ++ + W+p ++ + ngp Y+vt+ +p++ fh11147 713 PdRNPQNIRVQASQPKEMIIKWEPLKsmeQNGPGLEYRVTW-KPQGA 758 ge.wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + +w e tv+++t + + +Y v+VqA+n+ G+Gp fh11147 759 PVeWEEETVTNHT--LRVMTPAVYAPYDVKVQAINQLGsGPDP 799 PF00041.11.fs: domain 3 of 4, from 811 to 906: score 27.4, E = 3.2e-07 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ aP v ++st + ++Ws ++++ +g + gY++ + +++ + fh11147 811 PdTAPVIHGVDVINSTLVKVTWSTVPkdrVHGRLKGYQINW-WKTKS 856 ge.......wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS +++++++++++ + +++s ++ L + +e +++V A+n +G GpeS fh11147 857 LLdgrthpkEVNILRFSGQRnSGMVPSLDAFSEFHLTVLAYNSKGaGPES 906 <-* fh11147 - - PF00041.11.ls: domain 3 of 4, from 811 to 906: score 29.4, E = 1.2e-05 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ aP v ++st + ++Ws ++++ +g + gY++ + +++ + fh11147 811 PdTAPVIHGVDVINSTLVKVTWSTVPkdrVHGRLKGYQINW-WKTKS 856 ge.......wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS +++++++++++ + +++s ++ L + +e +++V A+n +G GpeS fh11147 857 LLdgrthpkEVNILRFSGQRnSGMVPSLDAFSEFHLTVLAYNSKGaGPES 906 <-* fh11147 - - PF00041.11.ls: domain 4 of 4, from 918 to 1007: score 55.0, E = 2.3e-13 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P +Pt l+v+ v +++tlsW P++ ng +tgY ++y q n+ + fh11147 918 PEQPTFLKVIKVDKDTATLSWGLPKkLNGNLTGYLLQY-QIINDTYe 963 .....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ ++ ++t+p+ s +l++L++ t+Y+++++A + +G G++ fh11147 964 igelnDINITTPSKP-SWHLSNLNATTKYKFYLRACTSQGcGKPI 1007 PF00041.11.fs: domain 4 of 4, from 918 to 1007: score 53.0, E = 1.4e-14 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P +Pt l+v+ v +++tlsW P++ ng +tgY ++y q n+ + fh11147 918 PEQPTFLKVIKVDKDTATLSWGLPKkLNGNLTGYLLQY-QIINDTYe 963 .....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ ++ ++t+p+ s +l++L++ t+Y+++++A + +G G++ fh11147 964 igelnDINITTPSKP-SWHLSNLNATTKYKFYLRACTSQGcGKPI 1007 //