hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-14265979/chunk_1/iprscan-20080809-14265979.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh11147 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 196.4 2.7e-54 6 SM00408 177.7 1.1e-48 5 SM00060 146.9 2e-39 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/6 43 130 .. 1 58 [] 2.9 97 SM00408 1/5 50 118 .. 1 56 [] 23.6 0.019 SM00409 2/6 140 227 .. 1 58 [] 33.1 3.8e-05 SM00409 3/6 249 330 .. 1 58 [] 48.4 9.2e-10 SM00408 2/5 255 319 .. 1 56 [] 61.2 1.3e-13 SM00409 4/6 339 421 .. 1 58 [] 40.1 2.9e-07 SM00408 3/5 345 410 .. 1 56 [] 38.5 9.2e-07 SM00409 5/6 432 514 .. 1 58 [] 36.0 5.1e-06 SM00408 4/5 438 503 .. 1 56 [] 43.0 3.9e-08 SM00409 6/6 523 611 .. 1 58 [] 35.9 5.5e-06 SM00408 5/5 541 600 .. 1 56 [] 11.4 0.36 SM00060 1/4 614 697 .. 1 69 [] 59.1 5.7e-13 SM00060 2/4 714 796 .. 1 69 [] 31.0 0.00016 SM00060 3/4 812 903 .. 1 69 [] 17.7 1.6 SM00060 4/4 918 1004 .. 1 69 [] 39.1 6.1e-07 Alignments of top-scoring domains: SM00409: domain 1 of 6, from 43 to 130: score 2.9, E = 97 *->pp.vtvke.GesvtLtC.as.....titWy................. ++ +++ + e +++C+a++++ +t++W++++++ ++++ +++ fh11147 43 SKvQVAFPfDEYFQIECeAKgnpepTFSWTkdgnpfyftdhriipsn 89 ....LtI.nvtpeDse..sgGtYtCaat..sgsasseqgttLtVl<-* ++++++I+n ++ + G Y+C a+++ g a s ++++ +V fh11147 90 nsgtFRIpNEGHI--ShfQ-GKYRCFASnkLGIAMS-EEIEFIVP 130 SM00408: domain 1 of 5, from 50 to 118: score 23.6, E = 0.019 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti ++ ++++C+a g+p+p+++W+k+g p ++++ ++++++t +i fh11147 50 PFDEYFQIECEAKGNPEPTFSWTKdGNPFYftdhriipsnNSGTFRI 96 knvs.leD.sGlYtCvArNsvg<-* n + ++ G+Y+C+A+N+ g fh11147 97 PNEGhISHfQGKYRCFASNKLG 118 SM00409: domain 2 of 6, from 140 to 227: score 33.1, E = 3.8e-05 *->pp.vtvkeGesvtLtC.as......titWy................. +++v eG++++L+C+ +++ ++ +i+W++ + ++ + ++ fh11147 140 IDpLEVEEGDPIVLPCnPPkglpplHIYWMnielehieqdervymsq 186 ...LtI.nvtpeDsesgGtYtCaat.....sgsasseqgttLtVl<-* +++L + nv++ Ds + +Y C a ++ + ++++ + +LtV fh11147 187 kgdLYFaNVEEKDS--RNDYCCFAAfprlrTIVQKM--PMKLTVN 227 SM00409: domain 3 of 6, from 249 to 330: score 48.4, E = 9.2e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++t Ge + L+C a++ +++++ W + +++ ++++ + + ++ fh11147 249 ESsITILKGEILLLECfAEglptpQVDWNkiggdlpkgreakenygk 295 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L I+nv+++D G+Y+C+a++ g+a+ ++++V+ fh11147 296 tLKIeNVSYQDK---GNYRCTASnfLGTATH--DFHVIVE 330 SM00408: domain 2 of 5, from 255 to 319: score 61.2, E = 1.3e-13 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn l G+ + L+C+a+g p+p++ W k g lp++++ ++++g+tL+i+n fh11147 255 LKGEILLLECFAEGLPTPQVDWNKiGGDLPkgreakenYGKTLKIEN 301 vsleDsGlYtCvArNsvg<-* vs+ D G+Y+C+A+N g fh11147 302 VSYQDKGNYRCTASNFLG 319 SM00409: domain 4 of 6, from 339 to 421: score 40.1, E = 2.9e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++ + + G++ L C+a++ + +ti+W+ ++++ ++++ ++ + fh11147 339 PQsAVYSTGSNGILLCeAEgepqpTIKWRvngspvdnhpfagdvvfp 385 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + + ++n++p+++ ++Y+C+a++ +g++ + ++++ V fh11147 386 reISFtNLQPNHT---AVYQCEASnvHGTILA--NANIDVV 421 SM00408: domain 3 of 5, from 345 to 410: score 38.5, E = 9.2e-07 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik G + +L C+a+g p p+I+W+ +g+p+++++ ++ + +++ fh11147 345 STGSNGILLCEAEGEPQPTIKWRVnGSPVDnhpfagdvvFPREISFT 391 nvsleDsGlYtCvArNsvg<-* n ++++ +Y+C+A+N +g fh11147 392 NLQPNHTAVYQCEASNVHG 410 SM00409: domain 5 of 6, from 432 to 514: score 36.0, E = 5.1e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++ ++G s+ L+C++ ++ ++W + ++ +++ + + fh11147 432 GEnYATVVGYSAFLHCeFFaspeaVVSWQkveevkplegrryhiyen 478 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L+I++ t+eD+ G Y C +++ g++ +++L ++ fh11147 479 gtLQInRTTEEDA---GSYSCWVEnaIGKTAV--TANLDIR 514 SM00408: domain 4 of 5, from 438 to 503: score 43.0, E = 3.9e-08 *->leGqsVtLtCpasgdpvpnItWlk...gkplp.......sgstLtik G s+ L C+ ++p++ ++W k ++ kpl++++ + ++tL+i fh11147 438 VVGYSAFLHCEFFASPEAVVSWQKveeVKPLEgrryhiyENGTLQIN 484 nvsleDsGlYtCvArNsvg<-* + ++eD+G Y+C ++N++g fh11147 485 RTTEEDAGSYSCWVENAIG 503 SM00409: domain 6 of 6, from 523 to 611: score 35.9, E = 5.5e-06 *->pp.vtvkeGesvtLtC.as.........titWy.............. p++ ++L+C+ + +++ +++ ++W++++ +++ ++ fh11147 523 PKnPRIPKLHMLELHCeSKcdshlkhslKLSWSkdgeafeingtedg 569 ........LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* + ++ +LtI+nvt+eD+ G+Y C a+++ + + + t++tVl fh11147 570 riiidganLTIsNVTLEDQ---GIYCCSAHtALDSAA-DITQVTVL 611 SM00408: domain 5 of 5, from 541 to 600: score 11.4, E = 0.36 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +C+ ++ +W k+g+ + +++++++ +g Lt fh11147 541 --------KCDSHLKHSLKLSWSKdGEAFEingtedgriiiDGANLT 579 iknvsleDsGlYtCvArNsvg<-* i+nv+leD G+Y C+A + fh11147 580 ISNVTLEDQGIYCCSAHTALD 600 SM00060: domain 1 of 4, from 614 to 697: score 59.1, E = 5.7e-13 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... P+pP+n l++++ ++ sv+l+We+ +++++i +Y+++ fh11147 614 PDPPEN---LHLSERQNR------SVRLTWEAGadhnsnISEYIvef 651 .....................ytltgLkPgaepwteYefrVrAvngndaG ++++++++++++ ++++++++ ++ L P +Y+frV+Avn+ +G fh11147 652 egnkeepgrweeltrvqgkktTVILPLAPF----VRYQFRVIAVNE--VG 695 eg<-* ++ fh11147 696 RS 697 SM00060: domain 2 of 4, from 714 to 796: score 31.0, E = 0.00016 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. P+n +rv + + + ++Wep ++ + +++ ++Yr+ fh11147 714 DRNPQN---IRVQASQPK------EMIIKWEPLksmeqngpGLEYRv 751 ..................ytltgLkPgaepwteYefrVrAvngndaGeg< ++++++ ++++++++++++tl+ +P ++ Y ++V+A+n G+g fh11147 752 twkpqgapveweeetvtnHTLRVMTPA--VYAPYDVKVQAINQ--LGSG 796 -* fh11147 - - SM00060: domain 3 of 4, from 812 to 903: score 17.7, E = 1.6 *->PgpPsnptelrvtdvtststsdltsvtlsWe.pP...........iv +P v ++st v ++W++ P++ ++ +++ + fh11147 812 DTAPVI---HGVDVINST------LVKVTWStVPkdrvhgrlkgyQI 849 gYr..........................ytltgLkPgaepwteYefrVr +++++++ ++++ +++++ + ++++++ ++ L + +e + +V fh11147 850 NWWktkslldgrthpkevnilrfsgqrnsGMVPSLDAF----SEFHLTVL 895 AvngndaGeg<-* A+n+ +G g fh11147 896 AYNS--KGAG 903 SM00060: domain 4 of 4, from 918 to 1004: score 39.1, E = 6.1e-07 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY P P+ l+v v+++ ++tlsW P++ +++ ++ ++Y fh11147 918 PEQPTF---LKVIKVDKD------TATLSWGLPkklngnltgyLLQY 955 r.......................ytltgLkPgaepwteYefrVrAvngn + +++ + ++ ++ + +++++++ l++L + t+Y+f +rA ++ fh11147 956 QiindtyeigelndinittpskpsWHLSNLNAT----TKYKFYLRACTS- 1000 daGeg<-* +G g fh11147 1001 -QGCG 1004 //