hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-14335119/chunk_1/iprscan-20080809-14335119.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh11410 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00102.17.fs Protein-tyrosine phosphatase 866.4 1.3e-257 2 PF00102.17.ls Protein-tyrosine phosphatase 862.2 2.4e-256 2 PF00041.11.ls Fibronectin type III domain 227.9 2e-65 4 PF00041.11.fs Fibronectin type III domain 222.6 8.1e-64 5 PF07679.6.fs Immunoglobulin I-set domain 163.2 5.6e-47 3 PF07679.6.ls Immunoglobulin I-set domain 163.4 5.6e-46 3 PF00047.15.ls Immunoglobulin domain 103.5 5.9e-28 3 PF00047.15.fs Immunoglobulin domain 98.7 1.6e-26 4 PF07686.7.fs Immunoglobulin V-set domain 20.8 2.1e-05 3 PF00782.11.fs Dual specificity phosphatase, catalytic 16.2 0.00024 2 PF07686.7.ls Immunoglobulin V-set domain 19.7 0.00051 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/3 59 150 .. 1 96 [] 90.4 5.2e-24 PF07679.6.fs 1/3 59 150 .. 1 96 [] 88.4 3.5e-25 PF00047.15.fs 1/4 73 135 .. 1 65 [] 34.5 1e-08 PF00047.15.ls 1/3 73 135 .. 1 65 [] 36.4 9.2e-08 PF07679.6.ls 2/3 161 251 .. 1 96 [] 45.6 1.6e-10 PF00047.15.fs 2/4 175 235 .. 1 65 [] 28.5 4.6e-07 PF00047.15.ls 2/3 175 235 .. 1 65 [] 30.4 5.9e-06 PF07679.6.fs 2/3 177 240 .. 17 86 .. 49.2 9.6e-14 PF07679.6.fs 3/3 258 341 .. 1 96 [] 25.6 7.5e-07 PF07679.6.ls 3/3 258 341 .. 1 96 [] 27.4 5.6e-06 PF00047.15.ls 3/3 272 326 .. 1 65 [] 36.7 7.4e-08 PF00047.15.fs 3/4 272 326 .. 1 65 [] 34.9 8e-09 PF00041.11.fs 1/5 345 427 .. 1 84 [] 68.5 4.8e-19 PF00041.11.ls 1/4 345 427 .. 1 84 [] 70.5 4.8e-18 PF00041.11.ls 2/4 439 526 .. 1 84 [] 66.6 7.5e-17 PF00041.11.fs 2/5 439 526 .. 1 84 [] 64.6 6.5e-18 PF00041.11.fs 3/5 538 619 .. 1 84 [] 79.4 3.6e-22 PF00041.11.ls 3/4 538 619 .. 1 84 [] 81.4 2.5e-21 PF00041.11.ls 4/4 629 700 .. 1 84 [] 9.4 0.017 PF00102.17.fs 1/2 1011 1242 .. 1 275 [] 468.5 7.5e-138 PF00102.17.ls 1/2 1011 1242 .. 1 275 [] 470.3 2.1e-138 PF00102.17.ls 2/2 1300 1533 .. 1 275 [] 391.8 9.3e-115 PF00102.17.fs 2/2 1300 1521 .. 1 263 [. 397.8 1.4e-116 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 3, from 59 to 150: score 90.4, E = 5.2e-24 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+++pkd+ G a+f C++tG+P+P V+W K+G++++s fh11410 59 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS---- 101 sdrfkvtydgGsgtytLtIsnv.qpdDsGkYtCvAtNsaGeaeasaeLtV + + +d+ s + L+I+ ++p+D+ +Y CvA+Ns+Ge +++a+LtV fh11410 102 QRFETIEFDE-SAGAVLRIQPLrTPRDENVYECVAQNSVGEITVHAKLTV 150 <-* fh11410 - - PF07679.6.fs: domain 1 of 3, from 59 to 150: score 88.4, E = 3.5e-25 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+++pkd+ G a+f C++tG+P+P V+W K+G++++s fh11410 59 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS---- 101 sdrfkvtydgGsgtytLtIsnv.qpdDsGkYtCvAtNsaGeaeasaeLtV + + +d+ s + L+I+ ++p+D+ +Y CvA+Ns+Ge +++a+LtV fh11410 102 QRFETIEFDE-SAGAVLRIQPLrTPRDENVYECVAQNSVGEITVHAKLTV 150 <-* fh11410 - - PF00047.15.fs: domain 1 of 4, from 73 to 135: score 34.5, E = 1e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ ++++C++ +g+p ++vtW + gk++ + t+ +++ + fh11410 73 GGVASFVCQA--TGDPKPRVTWNKKGKkVNsQRFETIEFDESAGAV- 116 tsLtitnvtpe.DggtYtCvv<-* L+i++++ +D+ +Y Cv+ fh11410 117 --LRIQPLRTPrDENVYECVA 135 PF00047.15.ls: domain 1 of 3, from 73 to 135: score 36.4, E = 9.2e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ ++++C++ +g+p ++vtW + gk++ + t+ +++ + fh11410 73 GGVASFVCQA--TGDPKPRVTWNKKGKkVNsQRFETIEFDESAGAV- 116 tsLtitnvtpe.DggtYtCvv<-* L+i++++ +D+ +Y Cv+ fh11410 117 --LRIQPLRTPrDENVYECVA 135 PF07679.6.ls: domain 2 of 3, from 161 to 251: score 45.6, E = 1.6e-10 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P ++ p+ +V +a++ C ++G+P+P+++WfKd p+ + +++ fh11410 161 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP-SAS 206 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaG.eaeasaeLtV +r+k +g L I + D GkY CvAtNsaG + ++ a+L V fh11410 207 NGRIKQLRSG-----ALQIESSEETDQGKYECVATNSAGvRYSSPANLYV 251 <-* fh11410 - - PF00047.15.fs: domain 2 of 4, from 175 to 235: score 28.5, E = 4.6e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++t+ C + +g+pd+++tW+++ ++ ++ + + + ++ fh11410 175 TRTATMLCAA--SGNPDPEITWFKDFLpVDpSASNGRIKQLRSGA-- 217 tsLtitnvtpeDggtYtCvv<-* L+i + ++ D g Y Cv+ fh11410 218 --LQIESSEETDQGKYECVA 235 PF00047.15.ls: domain 2 of 3, from 175 to 235: score 30.4, E = 5.9e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++t+ C + +g+pd+++tW+++ ++ ++ + + + ++ fh11410 175 TRTATMLCAA--SGNPDPEITWFKDFLpVDpSASNGRIKQLRSGA-- 217 tsLtitnvtpeDggtYtCvv<-* L+i + ++ D g Y Cv+ fh11410 218 --LQIESSEETDQGKYECVA 235 PF07679.6.fs: domain 2 of 3, from 177 to 240: score 49.2, E = 9.6e-14 *->sarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvtydgGsgtyt +a++ C ++G+P+P+++WfKd p+ + +++ +r+k +g fh11410 177 TATMLCAASGNPDPEITWFKDFLPVDP-SASNGRIKQLRSG-----A 217 LtIsnvqpdDsGkYtCvAtNsaG<-* L I + D GkY CvAtNsaG fh11410 218 LQIESSEETDQGKYECVATNSAG 240 PF07679.6.fs: domain 3 of 3, from 258 to 341: score 25.6, E = 7.5e-07 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F++ p + e++ G ++ +C + G+P P V W + ++l++ fh11410 258 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP---- 300 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +d + v + L+ +v+ Ds YtCvA s G ea a+ tV fh11410 301 EDDMPVGRNV------LELTDVK--DSANYTCVAMSSLGVIEAVAQITV 341 -* fh11410 - - PF07679.6.ls: domain 3 of 3, from 258 to 341: score 27.4, E = 5.6e-06 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F++ p + e++ G ++ +C + G+P P V W + ++l++ fh11410 258 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP---- 300 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +d + v + L+ +v+ Ds YtCvA s G ea a+ tV fh11410 301 EDDMPVGRNV------LELTDVK--DSANYTCVAMSSLGVIEAVAQITV 341 -* fh11410 - - PF00047.15.ls: domain 3 of 3, from 272 to 326: score 36.7, E = 7.4e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v++tC + g+p+++v W ++ +lt++++ + +n fh11410 272 GGNVNITCVA--VGSPMPYVKWMQGAEdLTpEDDMPVGRNV------ 310 tsLtitnvtpeDggtYtCvv<-* L +t+v+ D+++YtCv+ fh11410 311 --LELTDVK--DSANYTCVA 326 PF00047.15.fs: domain 3 of 4, from 272 to 326: score 34.9, E = 8e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v++tC + g+p+++v W ++ +lt++++ + +n fh11410 272 GGNVNITCVA--VGSPMPYVKWMQGAEdLTpEDDMPVGRNV------ 310 tsLtitnvtpeDggtYtCvv<-* L +t+v+ D+++YtCv+ fh11410 311 --LELTDVK--DSANYTCVA 326 PF00041.11.fs: domain 1 of 5, from 345 to 427: score 68.5, E = 4.8e-19 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w P aP+ + vt++t+ts+t++W+ p+++Y ++y ++k +++++ fh11410 345 PKAPGTPMVTENTATSITITWDSGN-PDPVSYYVIEY-KSK-SQDgP 388 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ + ttt+y + gL P++eY+++V Avn +G+Gp+S fh11410 389 YQIKEDITTTRYSIGGLSPNSEYEIWVSAVNSIGqGPPS 427 PF00041.11.ls: domain 1 of 4, from 345 to 427: score 70.5, E = 4.8e-18 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w P aP+ + vt++t+ts+t++W+ p+++Y ++y ++k +++++ fh11410 345 PKAPGTPMVTENTATSITITWDSGN-PDPVSYYVIEY-KSK-SQDgP 388 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ + ttt+y + gL P++eY+++V Avn +G+Gp+S fh11410 389 YQIKEDITTTRYSIGGLSPNSEYEIWVSAVNSIGqGPPS 427 PF00041.11.ls: domain 2 of 4, from 439 to 526: score 66.6, E = 7.5e-17 *->P.saPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge P saP+n++++ +++t++ ++W+ P ++ng i gY+v y ++ ++e fh11410 439 PaSAPRNVQARMLSATTMIVQWEEPVePNGLIRGYRV-Y-YTM-EPE 482 .....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ ++w+ +v+ + t+ L ++ +YtvrV A + +G+Gp S fh11410 483 hpvgnWQKHNVDDSL-LTTVGSLLEDETYTVRVLAFTSVGdGPLS 526 PF00041.11.fs: domain 2 of 5, from 439 to 526: score 64.6, E = 6.5e-18 *->P.saPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge P saP+n++++ +++t++ ++W+ P ++ng i gY+v y ++ ++e fh11410 439 PaSAPRNVQARMLSATTMIVQWEEPVePNGLIRGYRV-Y-YTM-EPE 482 .....wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ ++w+ +v+ + t+ L ++ +YtvrV A + +G+Gp S fh11410 483 hpvgnWQKHNVDDSL-LTTVGSLLEDETYTVRVLAFTSVGdGPLS 526 PF00041.11.fs: domain 3 of 5, from 538 to 619: score 79.4, E = 3.6e-22 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk P++P nl+++++++ts+tlsWspP+ + i +Ye+ R + ++g ++ fh11410 538 PGQPMNLRAEARSETSITLSWSPPR-QESIIKYELLFR-EGDHGREV 582 eltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +t ++tt sy++++LkP+teY +r++A++ +G G+++ fh11410 583 GRTFDPTT-SYVVEDLKPNTEYAFRLAARSPQGlGAFT 619 PF00041.11.ls: domain 3 of 4, from 538 to 619: score 81.4, E = 2.5e-21 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk P++P nl+++++++ts+tlsWspP+ + i +Ye+ R + ++g ++ fh11410 538 PGQPMNLRAEARSETSITLSWSPPR-QESIIKYELLFR-EGDHGREV 582 eltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +t ++tt sy++++LkP+teY +r++A++ +G G+++ fh11410 583 GRTFDPTT-SYVVEDLKPNTEYAFRLAARSPQGlGAFT 619 PF00041.11.ls: domain 4 of 4, from 629 to 700: score 9.4, E = 0.017 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk +P+n++v+ + ts+ lsW+ P++ t Y+++y +g fh11410 629 SISPKNFKVKMIMKTSVLLSWEFPDNYNSPTPYKIQY-----NG--L 668 eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +l+v+g tt +t LkP+t Y++ ++ n+g S fh11410 669 TLDVDGRTTKKLITHLKPHTFYNFVLT--NRG---SS 700 PF00102.17.fs: domain 1 of 2, from 1011 to 1242: score 468.5, E = 7.5e-138 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv Nk+KNRy ++++yDh+RV+L+pi+g +sDYINA+y+dg fh11410 1011 NKPKNRYANVIAYDHSRVILQPIEGIMGSDYINANYVDG-------- 1049 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y++++ayIaTQgPlp+T++DFWrMvweq++++IVM+t+l+Ek+r +K C fh11410 1050 YRRQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSR--IK-C 1096 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +qYWP+ g++tyG i+Vtl ++ ++a ++vRt++l ++g+ fh11410 1097 DQYWPN----RGTETYGFIQVTLLDTIELATFCVRTFSLHKnGS------ 1136 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg +e+r+V++f++t+WPDhgvPe p+++l +lr+v+ ++p fh11410 1137 -----SEKREVRQFQFTAWPDHGVPEY-PTPFLAFLRRVKTCNP------ 1174 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf pd+g PivVHCSAGvGRTG+fi+id++l++++ e++v dv+ fh11410 1175 ---PDAG-------PIVVHCSAGVGRTGCFIVIDAMLERIKPEKTV-DVY 1213 diVkelRsqRpgmVQteeQYiFlydaile<-* + V +RsqR++mVQte+QY+F+++a+le fh11410 1214 GHVTLMRSQRNYMVQTEDQYSFIHEALLE 1242 PF00102.17.ls: domain 1 of 2, from 1011 to 1242: score 470.3, E = 2.1e-138 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv Nk+KNRy ++++yDh+RV+L+pi+g +sDYINA+y+dg fh11410 1011 NKPKNRYANVIAYDHSRVILQPIEGIMGSDYINANYVDG-------- 1049 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y++++ayIaTQgPlp+T++DFWrMvweq++++IVM+t+l+Ek+r +K C fh11410 1050 YRRQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSR--IK-C 1096 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +qYWP+ g++tyG i+Vtl ++ ++a ++vRt++l ++g+ fh11410 1097 DQYWPN----RGTETYGFIQVTLLDTIELATFCVRTFSLHKnGS------ 1136 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg +e+r+V++f++t+WPDhgvPe p+++l +lr+v+ ++p fh11410 1137 -----SEKREVRQFQFTAWPDHGVPEY-PTPFLAFLRRVKTCNP------ 1174 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf pd+g PivVHCSAGvGRTG+fi+id++l++++ e++v dv+ fh11410 1175 ---PDAG-------PIVVHCSAGVGRTGCFIVIDAMLERIKPEKTV-DVY 1213 diVkelRsqRpgmVQteeQYiFlydaile<-* + V +RsqR++mVQte+QY+F+++a+le fh11410 1214 GHVTLMRSQRNYMVQTEDQYSFIHEALLE 1242 PF00102.17.ls: domain 2 of 2, from 1300 to 1533: score 391.8, E = 9.3e-115 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv Nk KNR ++i py++tRV+L+pi+g e+sDYINAs+idg fh11410 1300 NKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDG-------- 1338 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y+++kayIaTQgPl +T eDFWrM we+++t++VMLt+l E+gr eK C fh11410 1339 YRQQKAYIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGR--EK-C 1385 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +qYWP ++s +y + V + e+ ++ y++R++++t+ d fh11410 1386 HQYWPA----ERSARYQYFVVDPMAEYNMPQYILREFKVTDaRD------ 1425 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg g++rtV++f++t+WP++gvP+sg +++d++ +v+k+++ fh11410 1426 -----GQSRTVRQFQFTDWPEQGVPKSG-EGFIDFIGQVHKTKE------ 1463 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf +++ +g Pi VHCSAGvGRTG+fi+++i+l++++ eg+v d+f fh11410 1464 -QFGQDG-------PISVHCSAGVGRTGVFITLSIVLERMRYEGVV-DIF 1504 diVkelRsqRpgmVQteeQYiFlydaile<-* ++Vk+lR+qRp mVQte a+++ fh11410 1505 QTVKMLRTQRPAMVQTETESRPGWSAVAQ 1533 PF00102.17.fs: domain 2 of 2, from 1300 to 1521: score 397.8, E = 1.4e-116 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv Nk KNR ++i py++tRV+L+pi+g e+sDYINAs+idg fh11410 1300 NKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDG-------- 1338 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y+++kayIaTQgPl +T eDFWrM we+++t++VMLt+l E+gr eK C fh11410 1339 YRQQKAYIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGR--EK-C 1385 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +qYWP ++s +y + V + e+ ++ y++R++++t+ d fh11410 1386 HQYWPA----ERSARYQYFVVDPMAEYNMPQYILREFKVTDaRD------ 1425 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg g++rtV++f++t+WP++gvP+sg +++d++ +v+k+++ fh11410 1426 -----GQSRTVRQFQFTDWPEQGVPKSG-EGFIDFIGQVHKTKE------ 1463 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf +++ +g Pi VHCSAGvGRTG+fi+++i+l++++ eg+v d+f fh11410 1464 -QFGQDG-------PISVHCSAGVGRTGVFITLSIVLERMRYEGVV-DIF 1504 diVkelRsqRpgmVQte<-* ++Vk+lR+qRp mVQte fh11410 1505 QTVKMLRTQRPAMVQTE 1521 //