hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-14335119/chunk_1/iprscan-20080809-14335119.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh11410 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00194 879.1 8e-260 2 SM00404 294.3 9e-84 2 SM00060 208.2 7.6e-58 4 SM00408 146.8 2.3e-39 3 SM00409 129.3 4.2e-34 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/3 65 151 .. 1 58 [] 36.7 3.2e-06 SM00408 1/3 71 140 .. 1 56 [] 48.1 1.1e-09 SM00409 2/3 167 252 .. 1 58 [] 52.5 5.5e-11 SM00408 2/3 173 240 .. 1 56 [] 66.8 2.7e-15 SM00409 3/3 264 342 .. 1 58 [] 40.1 2.9e-07 SM00408 3/3 270 331 .. 1 56 [] 31.8 9.3e-05 SM00060 1/4 345 424 .. 1 69 [] 62.1 7.1e-14 SM00060 2/4 440 523 .. 1 69 [] 49.5 4.3e-10 SM00060 3/4 538 616 .. 1 69 [] 68.8 7e-16 SM00060 4/4 629 705 .. 1 69 [] 27.8 0.0015 SM00194 1/2 987 1245 .. 1 308 [] 473.2 1.3e-137 SM00404 1/2 1141 1242 .. 1 92 [] 165.6 4.9e-45 SM00194 2/2 1274 1536 .. 1 308 [] 406.0 2.2e-117 SM00404 2/2 1430 1533 .. 1 92 [] 128.7 6.5e-34 Alignments of top-scoring domains: SM00409: domain 1 of 3, from 65 to 151: score 36.7, E = 3.2e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ ++ G+ +++ C+a++++++++tW +++++ ++++ + + fh11410 65 PKdQIGVSGGVASFVCqATgdpkpRVTWNkkgkkvnsqrfetiefde 111 .....LtI.nv.tpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + + L+I++++tp D+ +Y C+a+++ g+++ ++LtVl fh11410 112 sagavLRIqPLrTPRDE---NVYECVAQnsVGEITV--HAKLTVL 151 SM00408: domain 1 of 3, from 71 to 140: score 48.1, E = 1.1e-09 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL +G+ +++ C a+gdp p +tW k+gk++++++ ++ + +++ g L fh11410 71 VSGGVASFVCQATGDPKPRVTWNKkGKKVNsqrfetiefdesAGAVL 117 tiknvs.leDsGlYtCvArNsvg<-* +i++ +++ D+ +Y+CvA+Nsvg fh11410 118 RIQPLRtPRDENVYECVAQNSVG 140 SM00409: domain 2 of 3, from 167 to 252: score 52.5, E = 5.5e-11 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+ +v + ++t+ C as++++++itW+++ + +++ ++++ ++ fh11410 167 PQlKVVERTRTATMLCaASgnpdpEITWFkdflpvdpsasngrikql 213 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ L+I++ ++ D+ G Y C+at+++g+ +s +++L+V+ fh11410 214 rsgaLQIeSSEETDQ---GKYECVATnsAGVRYS-SPANLYVR 252 SM00408: domain 2 of 3, from 173 to 240: score 66.8, E = 2.7e-15 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + +++t+ C asg+p+p+ItW+k+ p++++ ++++ ++ ++ L+ fh11410 173 ERTRTATMLCAASGNPDPEITWFKdFLPVDpsasngrikqlRSGALQ 219 iknvsleDsGlYtCvArNsvg<-* i++ ++ D G+Y+CvA+Ns+g fh11410 220 IESSEETDQGKYECVATNSAG 240 SM00409: domain 3 of 3, from 264 to 342: score 40.1, E = 2.9e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. p +++ ++G++v++tC a +++ ++++W+++ + ++ ++ + +++ fh11410 264 PMsHEIMPGGNVNITCvAVgspmpYVKWMqgaedltpeddmpvgrnv 310 LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L++++v+ + ++YtC+a ++ g++++ +++tV+ fh11410 311 LELtDVKDS-----ANYTCVAMssLGVIEA--VAQITVK 342 SM00408: domain 3 of 3, from 270 to 331: score 31.8, E = 9.3e-05 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv +G++V +tC a g+p p ++W + + l ++++ + +++ L++++v fh11410 270 MPGGNVNITCVAVGSPMPYVKWMQgAEDLTpeddmpvGRNVLELTDV 316 sleDsGlYtCvArNsvg<-* + Ds +YtCvA +s g fh11410 317 K--DSANYTCVAMSSLG 331 SM00060: domain 1 of 4, from 345 to 424: score 62.1, E = 7.1e-14 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. P +P+ + vt+ t+t s+t++W+ ++++ ++++++Y++ fh11410 345 PKAPGT---PMVTENTAT------SITITWDSGnpdpvsyyVIEYKs 382 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++ + +++ ++++y + gL+P+ +eYe++V+Avn+ G+g fh11410 383 ksqdgpyqikeditttrYSIGGLSPN----SEYEIWVSAVNS--IGQG 424 * fh11410 - - SM00060: domain 2 of 4, from 440 to 523: score 49.5, E = 4.3e-10 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY ++P+n ++++ ++t ++ ++We+P ++++ +++v+Y fh11410 440 ASAPRN---VQARMLSAT------TMIVQWEEPvepnglirgyRVYY 477 r....................ytltgLkPgaepwteYefrVrAvngndaG + +++ +++++++ +++++ t+ L ++ +Y++rV A+++ +G fh11410 478 TmepehpvgnwqkhnvddsllTTVGSLLED----ETYTVRVLAFTS--VG 521 eg<-* g fh11410 522 DG 523 SM00060: domain 3 of 4, from 538 to 616: score 68.8, E = 7e-16 *->PgpPsnptelrvtdvtststsdltsvtlsWepP....ivgYr..... Pg P n lr+++ ++t s+tlsW+pP ++i+ Y+ ++ fh11410 538 PGQPMN---LRAEARSET------SITLSWSPPrqesIIKYEllfre 575 ................ytltgLkPgaepwteYefrVrAvngndaGeg<-* ++ +++++++ +++++y++++LkP+ teY fr++A++ +G g fh11410 576 gdhgrevgrtfdpttsYVVEDLKPN----TEYAFRLAARSP--QGLG 616 SM00060: domain 4 of 4, from 629 to 705: score 27.8, E = 0.0015 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.........ivgYr +P+n ++v+ + +t sv lsWe P++++++ ++ ++Y fh11410 629 SISPKN---FKVKMIMKT------SVLLSWEFPdnynsptpyKIQYN 666 ............ytltgLkPgaepwteYefrVrAvngndaGeg<-* + + ++++++++ +t+LkP+ t Y+f ++ + ++ +G fh11410 667 gltldvdgrttkKLITHLKPH----TFYNFVLTNRGSSLGGLQ 705 SM00194: domain 1 of 2, from 987 to 1245: score 473.2, E = 1.3e-137 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi +l++E+e+++ ++ +++++nl+ N+ KNRY ++ fh11410 987 KLSQEYESIDPGQQF----------TWEHSNLEVNK--PKNRYA-NV 1020 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT ++yDh+RV+L+p++g gsDYINAny+dgy++++ayIaTQGPLp+T fh11410 1021 IAYDHSRVILQPIEGI----MGSDYINANYVDGYRRQNAYIATQGPLPET 1066 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty + DFWrMVweq++++IVM+t+l+Ek r+KC+qYWP+ +++ty fh11410 1067 FGDFWRMVWEQRSATIVMMTRLEEK--------SRIKCDQYWPNRgTETY 1108 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn G i+Vtl+++ l+ + +Rt+++ + g se+r+V+++++t+ fh11410 1109 GFIQVTLLDTIELA-TFCVRTFSLHKNGS--------SEKREVRQFQFTA 1149 WPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPi WPDhgvPe p+++l+f+r+v+++++ +gPi fh11410 1150 WPDHGVPEYPTPFLAFLRRVKTCNPPD-------------------AGPI 1180 vVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTe vVHCSAGvGRTG+Fi+id++l++++ +++vd+++ V +RsqR++mVQTe fh11410 1181 VVHCSAGVGRTGCFIVIDAMLERIKPektVDVYGHVTLMRSQRNYMVQTE 1230 eQYiFlyraileylk<-* +QY+F+++a+le + fh11410 1231 DQYSFIHEALLEAVG 1245 SM00404: domain 1 of 2, from 1141 to 1242: score 165.6, E = 4.9e-45 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.......PivV +v+++++t+WpDh gvPe + ++l flr+v+ ++++ +PivV fh11410 1141 EVRQFQFTAWPDH-----GVPEypTPFLAFLRRVKTcnppdagPIVV 1182 HCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqteeQ HCSAGvGRTG+f++id +l++ +++++vd+++ v +RsqR+ mvqte+Q fh11410 1183 HCSAGVGRTGCFIVIDAMLERikpektVDVYGHVTLMRSQRNYMVQTEDQ 1232 YlFlyralle<-* Y F+++alle fh11410 1233 YSFIHEALLE 1242 SM00194: domain 2 of 2, from 1274 to 1536: score 406.0, E = 2.2e-117 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi g e Ef+rl + + + + ++ +anlp+N+ KNR +i fh11410 1274 GMELEFKRLANSKAHTS--------RFISANLPCNK--FKNRLV-NI 1309 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT +py++tRV+L+p+ g egsDYINA++idgy+++kayIaTQGPL +T fh11410 1310 MPYESTRVCLQPIRGV----EGSDYINASFIDGYRQQKAYIATQGPLAET 1355 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty eDFWrM we++++++VMLt+l E+ greKC+qYWP e+s y fh11410 1356 TEDFWRMLWENNSTIVVMLTKLREM--------GREKCHQYWPAErSARY 1397 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn + V + e+++p y++R+++vt+ + +++rtV+++++t+ fh11410 1398 QYFVVDPMAEYNMP-QYILREFKVTDARD--------GQSRTVRQFQFTD 1438 WPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPi WP++gvP+s ++++df+ +v+k+++++++ +gPi fh11410 1439 WPEQGVPKSGEGFIDFIGQVHKTKEQFGQ-----------------DGPI 1471 vVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTe VHCSAGvGRTG+Fi+++i+l++++ ++ vdif++Vk+lR+qRp mVQTe fh11410 1472 SVHCSAGVGRTGVFITLSIVLERMRYegvVDIFQTVKMLRTQRPAMVQTE 1521 eQYiFlyraileylk<-* + a+++ + fh11410 1522 TESRPGWSAVAQSRL 1536 SM00404: domain 2 of 2, from 1430 to 1533: score 128.7, E = 6.5e-34 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.........Pi tv+++++t+Wp++ gvP++++++++f+ +v+k++++ ++++Pi fh11410 1430 TVRQFQFTDWPEQ-----GVPKsgEGFIDFIGQVHKtkeqfgqdgPI 1471 vVHCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqte VHCSAGvGRTG+f++++i+l++ + ++ vdif+tvk+lR+qRp mvqte fh11410 1472 SVHCSAGVGRTGVFITLSIVLERmryegvVDIFQTVKMLRTQRPAMVQTE 1521 eQYlFlyralle<-* + + a+++ fh11410 1522 TESRPGWSAVAQ 1533 //