hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-08214816/chunk_1/iprscan-20090618-08214816.nocrc
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Query sequence: fh11504
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02825.10.fs WWE domain                                      65.6    3.5e-18   1
PF02825.10.ls WWE domain                                      67.4    4.2e-17   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           23.7    5.4e-08   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           25.4    0.00018   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1      48    85 ..     1    50 []    23.7  5.4e-08
PF00097.15.ls   1/1      48    85 ..     1    50 []    25.4  0.00018
PF02825.10.fs   1/1     104   179 ..     1    89 []    65.6  3.5e-18
PF02825.10.ls   1/1     104   179 ..     1    89 []    67.4  4.2e-17

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 48 to 85: score 23.7, E = 5.4e-08
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsCle..rwlsssgnt
                      C+ICl+++  p+      lpC+H      fC+ C+++ +wl     +
     fh11504    48    CAICLQTCVHPV-----SLPCKHV-----FCYLCVKgaSWLG----K 80   

                   tCplC<-*
                    C lC   
     fh11504    81 RCALC    85   

PF00097.15.ls: domain 1 of 1, from 48 to 85: score 25.4, E = 0.00018
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsCle..rwlsssgnt
                      C+ICl+++  p+      lpC+H      fC+ C+++ +wl     +
     fh11504    48    CAICLQTCVHPV-----SLPCKHV-----FCYLCVKgaSWLG----K 80   

                   tCplC<-*
                    C lC   
     fh11504    81 RCALC    85   

PF02825.10.fs: domain 1 of 1, from 104 to 179: score 65.6, E = 3.5e-18
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      ++ ++s  +g   + W ye     ++gW+ Y++++sr++E+a++++k
     fh11504   104    ELKAASRGNG--EYAWYYE----GRNGWWQYDERTSRELEDAFSKGK 144  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   k   + e +  i G+ Y+ d+++m+Q+r++++  +++R ++R   
     fh11504   145 K---NTE-M-LIAGFLYVADLENMVQYRRNEH--GRRRKIKR    179  

PF02825.10.ls: domain 1 of 1, from 104 to 179: score 67.4, E = 4.2e-17
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      ++ ++s  +g   + W ye     ++gW+ Y++++sr++E+a++++k
     fh11504   104    ELKAASRGNG--EYAWYYE----GRNGWWQYDERTSRELEDAFSKGK 144  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   k   + e +  i G+ Y+ d+++m+Q+r++++  +++R ++R   
     fh11504   145 K---NTE-M-LIAGFLYVADLENMVQYRRNEH--GRRRKIKR    179  

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