hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-14461517/chunk_1/iprscan-20080809-14461517.nocrc
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Query sequence: fh11572
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          85.3    1.7e-22   3
PF00096.16.fs Zinc finger, C2H2 type                          79.3    1.1e-20   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   2/3     532   556 ..     1    24 []    38.5  2.2e-08
PF00096.16.ls   2/3     532   556 ..     1    24 []    40.5  5.4e-09
PF00096.16.fs   3/3     562   584 ..     1    24 []    32.1  9.5e-07
PF00096.16.ls   3/3     562   584 ..     1    24 []    34.1  4.6e-07

Alignments of top-scoring domains:
PF00096.16.fs: domain 2 of 3, from 532 to 556: score 38.5, E = 2.2e-08
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C++ +Cgk+F+r+++L+rH+rtH   
     fh11572   532    FVCNWmYCGKRFTRSDELQRHRRTH    556  

PF00096.16.ls: domain 2 of 3, from 532 to 556: score 40.5, E = 5.4e-09
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C++ +Cgk+F+r+++L+rH+rtH   
     fh11572   532    FVCNWmYCGKRFTRSDELQRHRRTH    556  

PF00096.16.fs: domain 3 of 3, from 562 to 584: score 32.1, E = 9.5e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +C k+F r+++L +H++tH   
     fh11572   562    FVCP-ECSKRFMRSDHLAKHIKTH    584  

PF00096.16.ls: domain 3 of 3, from 562 to 584: score 34.1, E = 4.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +C k+F r+++L +H++tH   
     fh11572   562    FVCP-ECSKRFMRSDHLAKHIKTH    584  

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