hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-14461517/chunk_1/iprscan-20080809-14461517.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh11572
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  59.7    3.6e-13   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3     502   526 ..     1    23 []     0.5  2.7e+02
SM00355      2/3     532   556 ..     1    23 []    30.3  0.00027
SM00355      3/3     562   584 ..     1    23 []    28.9  0.00069

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 502 to 526: score 0.5, E = 2.7e+02
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + C+i+g gk++   ++L+ H+r H   
     fh11572   502    HICHIpGFGKVYGKTsHLRAHLRWH    526  

SM00355: domain 2 of 3, from 532 to 556: score 30.3, E = 0.00027
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++C++ +Cgk+f++ ++L+rH r+H   
     fh11572   532    FVCNWmYCGKRFTRSdELQRHRRTH    556  

SM00355: domain 3 of 3, from 562 to 584: score 28.9, E = 0.00069
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C+k+f + ++L +H+++H   
     fh11572   562    FVCPE-CSKRFMRSdHLAKHIKTH    584  

//