hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-14524553/chunk_1/iprscan-20080809-14524553.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh11574 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08374.2.ls Protocadherin 604.7 7.5e-179 1 PF08374.2.fs Protocadherin 604.4 9.4e-179 2 PF00028.8.fs Cadherin domain 370.1 3.3e-108 8 PF00028.8.ls Cadherin domain 366.1 5.2e-107 6 PF08266.2.fs Cadherin-like 26.5 3.4e-07 5 PF08266.2.ls Cadherin-like 10.5 1.3e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 34 129 .. 1 84 [] 10.5 1.3e-06 PF00028.8.fs 2/8 157 253 .. 1 107 [] 46.4 1.1e-12 PF00028.8.ls 1/6 157 253 .. 1 107 [] 48.2 2.6e-11 PF00028.8.fs 3/8 267 359 .. 1 107 [] 88.5 9.5e-25 PF00028.8.ls 2/6 267 359 .. 1 107 [] 90.3 5.5e-24 PF00028.8.ls 3/6 379 470 .. 1 107 [] 29.3 1.3e-05 PF00028.8.fs 5/8 437 470 .. 65 107 .] 20.4 3.1e-05 PF00028.8.ls 4/6 484 573 .. 1 107 [] 76.7 6.8e-20 PF00028.8.fs 6/8 484 573 .. 1 107 [] 74.9 7.4e-21 PF00028.8.fs 7/8 587 676 .. 1 107 [] 90.4 2.6e-25 PF00028.8.ls 5/6 587 676 .. 1 107 [] 92.2 1.4e-24 PF00028.8.ls 6/6 695 783 .. 1 107 [] 29.4 1.2e-05 PF00028.8.fs 8/8 703 747 .. 11 61 .. 33.4 6e-09 PF08374.2.fs 2/2 787 1012 .. 1 232 [] 602.7 3e-178 PF08374.2.ls 1/1 787 1012 .. 1 232 [] 604.7 7.5e-179 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 34 to 129: score 10.5, E = 1.3e-06 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRg.....aRivSg. + + Y++ EE+++ +GN+ KDL+++ a+ + + R+vS+ fh11574 34 QELIYTIREELPENVPIGNIPKDLNISHINAATGTsaslvYRLVSKa 80 gnkqyFqlnletGdLl.vnERiDREeLCgqse.....pCvLhlevllEn< g ++ +++ tG+ ++++ RiDRE+LC+ + +++ C +lev++ fh11574 81 GDAPLVKVSSSTGEIFtTSNRIDREKLCAGASyaeenECFFELEVVILP 129 -* fh11574 - - PF00028.8.fs: domain 2 of 8, from 157 to 253: score 46.4, E = 1.1e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++s+pEn+ ++++ AtD+D +g Ng +Y +l+g + F fh11574 157 INISIPENTLINSRFPIPSATDPD--TGFNGVQHYELLNGQS--VFG 199 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg +d eg + +++ ++++LDRE+ ++Y+ +++ D+ g+ fh11574 200 LDIVETP-EGEkwpqLIVQQNLDREQK--DTYVMKIKVEDG-------GT 239 pplsstatvtitVl<-* p +ssta + +tV fh11574 240 PQKSSTAILQVTVS 253 PF00028.8.ls: domain 1 of 6, from 157 to 253: score 48.2, E = 2.6e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++s+pEn+ ++++ AtD+D +g Ng +Y +l+g + F fh11574 157 INISIPENTLINSRFPIPSATDPD--TGFNGVQHYELLNGQS--VFG 199 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg +d eg + +++ ++++LDRE+ ++Y+ +++ D+ g+ fh11574 200 LDIVETP-EGEkwpqLIVQQNLDREQK--DTYVMKIKVEDG-------GT 239 pplsstatvtitVl<-* p +ssta + +tV fh11574 240 PQKSSTAILQVTVS 253 PF00028.8.fs: domain 3 of 8, from 267 to 359: score 88.5, E = 9.5e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg ++++pEnapvGt+v++++AtDaD g N+ irY + + + +++ fh11574 267 VEVHIPENAPVGTSVIQLHATDAD--IGSNAEIRYIFGAQVApatKR 311 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F+++ tG i+++++LDREe+ ++ +tv+A+D++ fh11574 312 LFALNNTTGL----ITVQRSLDREET--AIHKVTVLASDGS--------- 346 plsstatvtitVl<-* + ++atvti+V+ fh11574 347 STPARATVTINVT 359 PF00028.8.ls: domain 2 of 6, from 267 to 359: score 90.3, E = 5.5e-24 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg ++++pEnapvGt+v++++AtDaD g N+ irY + + + +++ fh11574 267 VEVHIPENAPVGTSVIQLHATDAD--IGSNAEIRYIFGAQVApatKR 311 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F+++ tG i+++++LDREe+ ++ +tv+A+D++ fh11574 312 LFALNNTTGL----ITVQRSLDREET--AIHKVTVLASDGS--------- 346 plsstatvtitVl<-* + ++atvti+V+ fh11574 347 STPARATVTINVT 359 PF00028.8.ls: domain 3 of 6, from 379 to 470: score 29.3, E = 1.3e-05 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ ++E pv+t+++ +t++D+D + Ng++ +i + p + + fh11574 379 GTVYLSEKDPVNTKIALITVSDKD--TDVNGKVICFIEREVPFHLKA 423 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + + + t LD+E + e+++ ++A+D+ g p+l fh11574 424 VYDNQYL----LETSSLLDYEGT--KEFSFKIVASDS-------GKPSLN 460 statvtitVl<-* +ta v+++++ fh11574 461 QTALVRVKLE 470 PF00028.8.fs: domain 5 of 8, from 437 to 470: score 20.4, E = 3.1e-05 *->LDREeifngeYeLtveAtDadpllasgggpplsstatvtitVl<-* LD+E + e+++ ++A+D+ g p+l +ta v+++++ fh11574 437 LDYEGT--KEFSFKIVASDS-------GKPSLNQTALVRVKLE 470 PF00028.8.ls: domain 4 of 6, from 484 to 573: score 76.7, E = 6.8e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + sv+En ++G ++t+ AtD D +g N+ i+Y + ++ + F fh11574 484 IELSVSENNRRGLYLTTISATDED--SGKNADIVYQLGPNAS--FFD 526 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d++tG+ ++ + DREe+ +++ +tv A+D+ g+ppl fh11574 527 LDRKTGV----LTASRVFDREEQ--ERFIFTVTARDN-------GTPPLQ 563 statvtitVl<-* s a v++tVl fh11574 564 SQAAVIVTVL 573 PF00028.8.fs: domain 6 of 8, from 484 to 573: score 74.9, E = 7.4e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + sv+En ++G ++t+ AtD D +g N+ i+Y + ++ + F fh11574 484 IELSVSENNRRGLYLTTISATDED--SGKNADIVYQLGPNAS--FFD 526 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d++tG+ ++ + DREe+ +++ +tv A+D+ g+ppl fh11574 527 LDRKTGV----LTASRVFDREEQ--ERFIFTVTARDN-------GTPPLQ 563 statvtitVl<-* s a v++tVl fh11574 564 SQAAVIVTVL 573 PF00028.8.fs: domain 7 of 8, from 587 to 676: score 90.4, E = 2.6e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +++ v+En p ++v+++t+tDaD g N ++ sil++n ++F fh11574 587 FQFFVSENLPKYSTVGVITVTDAD--AGENKAVTLSILNDN--DNFV 629 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +dp++G+ i+ + DRE++ + Y++ v+AtD+ g+pp+s fh11574 630 LDPYSGV----IKSNVSFDREQQ--SSYTFDVKATDG-------GQPPRS 666 statvtitVl<-* sta vti+V fh11574 667 STAKVTINVM 676 PF00028.8.ls: domain 5 of 6, from 587 to 676: score 92.2, E = 1.4e-24 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +++ v+En p ++v+++t+tDaD g N ++ sil++n ++F fh11574 587 FQFFVSENLPKYSTVGVITVTDAD--AGENKAVTLSILNDN--DNFV 629 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +dp++G+ i+ + DRE++ + Y++ v+AtD+ g+pp+s fh11574 630 LDPYSGV----IKSNVSFDREQQ--SSYTFDVKATDG-------GQPPRS 666 statvtitVl<-* sta vti+V fh11574 667 STAKVTINVM 676 PF00028.8.ls: domain 6 of 6, from 695 to 783: score 29.4, E = 1.2e-05 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + ++ p G+ v+ v A+D D +g N+ ++Y i++gn +g Fr fh11574 695 KLVPLS-AIP-GSVVAEVFAVDVD--TGMNAELKYTIVSGNNKGLFR 737 IdpdtGdnegiisttkp...LDREeifngeYeLtveAtDadpllasgggp Idp tG i++ + + + D g ++L+v +D g+ fh11574 738 IDPVTGN----ITLEEKpapTDV-----GLHRLVVNISDL--------GY 770 plsstatvtitVl<-* p+s + v + + fh11574 771 PKSLHTLVLVFLY 783 PF00028.8.fs: domain 8 of 8, from 703 to 747: score 33.4, E = 6e-09 *->vGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdneg +G+ v+ v A+D D +g N+ ++Y i++gn +g FrIdp tG fh11574 703 PGSVVAEVFAVDVD--TGMNAELKYTIVSGNNKGLFRIDPVTGN--- 744 iist<-* i++ fh11574 745 -ITL 747 PF08374.2.fs: domain 2 of 2, from 787 to 1012: score 602.7, E = 3e-178 *->TvaNATlieeLirrSleTPLdrdIagdpeyerskdrlkIliavVAGv T++NA++i++Lirr++eTPLdr+I++++++++++d+l+I+ia++AG+ fh11574 787 TAGNASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGA 833 mtVilvIfvtVlVRYCRqaEsklkyaagkKqtedwftPnqenKqsikkkK m+Vi+vIfvtVlVR CR+a s++k+a+++Kq+++w++PnqenKq +kK fh11574 834 MVVIVVIFVTVLVR-CRHA-SRFKAAQRSKQGAEWMSPNQENKQ---NKK 878 KKkKKkKSPKplllnfVTiEesKpdDededgvnktLsLpleldepsmGry KK+KK+KSPK++llnfVTiEesKpdD++++++n+t+sLp+el+e+s+Gr+ fh11574 879 KKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAELEEQSIGRF 928 dWGvalPtnfkPgSPDLARHYKSaSPlPafQLqPqsPvasKKHqvvQdLP dWG+a+Pt+fkP+SPDLA+HYKSaSP+Paf+L+P++Pv++KKH+v+Q+LP fh11574 929 DWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELP 978 laNTFVGagDtiSKrSStgSDhySeysCrtnvnky<-* l+NTFVG++Dt+SKrSSt+SDh+S+++C+++ +++ fh11574 979 LDNTFVGGCDTLSKRSSTSSDHFSASECSSQ-GGF 1012 PF08374.2.ls: domain 1 of 1, from 787 to 1012: score 604.7, E = 7.5e-179 *->TvaNATlieeLirrSleTPLdrdIagdpeyerskdrlkIliavVAGv T++NA++i++Lirr++eTPLdr+I++++++++++d+l+I+ia++AG+ fh11574 787 TAGNASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGA 833 mtVilvIfvtVlVRYCRqaEsklkyaagkKqtedwftPnqenKqsikkkK m+Vi+vIfvtVlVR CR+a s++k+a+++Kq+++w++PnqenKq +kK fh11574 834 MVVIVVIFVTVLVR-CRHA-SRFKAAQRSKQGAEWMSPNQENKQ---NKK 878 KKkKKkKSPKplllnfVTiEesKpdDededgvnktLsLpleldepsmGry KK+KK+KSPK++llnfVTiEesKpdD++++++n+t+sLp+el+e+s+Gr+ fh11574 879 KKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAELEEQSIGRF 928 dWGvalPtnfkPgSPDLARHYKSaSPlPafQLqPqsPvasKKHqvvQdLP dWG+a+Pt+fkP+SPDLA+HYKSaSP+Paf+L+P++Pv++KKH+v+Q+LP fh11574 929 DWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELP 978 laNTFVGagDtiSKrSStgSDhySeysCrtnvnky<-* l+NTFVG++Dt+SKrSSt+SDh+S+++C+++ +++ fh11574 979 LDNTFVGGCDTLSKRSSTSSDHFSASECSSQ-GGF 1012 //