hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-15061008/chunk_1/iprscan-20080809-15061008.nocrc
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Query sequence: fh11777
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00616.9.ls GTPase-activator protein for Ras-like GTPase   238.3    1.5e-68   1
PF00616.9.fs GTPase-activator protein for Ras-like GTPase   236.4    5.5e-68   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00616.9.fs   1/1     306   480 ..     1   200 []   236.4  5.5e-68
PF00616.9.ls   1/1     306   480 ..     1   200 []   238.3  1.5e-68

Alignments of top-scoring domains:
PF00616.9.fs: domain 1 of 1, from 306 to 480: score 236.4, E = 5.5e-68
                   *->llsqlieeEieektsdpntlFRgNslatkllsaYlrrvgqeYLkdtL
                      ll++++ +E+e  +++++tlFRgNsla+k+++ +++ +g  YL+++L
     fh11777   306    LLWNMFSKEVEL-ADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLL 351  

                   gplireiveske..dlslElDPssklydgeineeeqtgpslpleknlenL
                    pl+r ++ s + ++ s+E+DP ++l+++e+           le+n++nL
     fh11777   352 DPLLRIVITSSDwqHVSFEVDP-TRLEPSES-----------LEENQRNL 389  

                   reycekfldaIisSvdklPpelryickqiresvekkfpdakqdeaerlsa
                    +++ekf++aIisS++++Pp+lr +c++++++v ++fp++    +  + a
     fh11777   390 LQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFPQN----S--IGA 433  

                   vggflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKvL
                   vg+ +FLRF ++PAivsP   g++       +++p pr  R L l +K+L
     fh11777   434 VGSAMFLRF-INPAIVSPYEAGIL-------DKKPPPRIERGLKLMSKIL 475  

                   Qnlan<-*
                   Q++an   
     fh11777   476 QSIAN    480  

PF00616.9.ls: domain 1 of 1, from 306 to 480: score 238.3, E = 1.5e-68
                   *->llsqlieeEieektsdpntlFRgNslatkllsaYlrrvgqeYLkdtL
                      ll++++ +E+e  +++++tlFRgNsla+k+++ +++ +g  YL+++L
     fh11777   306    LLWNMFSKEVEL-ADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLL 351  

                   gplireiveske..dlslElDPssklydgeineeeqtgpslpleknlenL
                    pl+r ++ s + ++ s+E+DP ++l+++e+           le+n++nL
     fh11777   352 DPLLRIVITSSDwqHVSFEVDP-TRLEPSES-----------LEENQRNL 389  

                   reycekfldaIisSvdklPpelryickqiresvekkfpdakqdeaerlsa
                    +++ekf++aIisS++++Pp+lr +c++++++v ++fp++    +  + a
     fh11777   390 LQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFPQN----S--IGA 433  

                   vggflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKvL
                   vg+ +FLRF ++PAivsP   g++       +++p pr  R L l +K+L
     fh11777   434 VGSAMFLRF-INPAIVSPYEAGIL-------DKKPPPRIERGLKLMSKIL 475  

                   Qnlan<-*
                   Q++an   
     fh11777   476 QSIAN    480  

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