hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-15193012/chunk_1/iprscan-20080809-15193012.nocrc
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Query sequence: fh12075
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF01743.10.ls Poly A polymerase head domain                 173.3    5.7e-49   1
PF01743.10.fs Poly A polymerase head domain                 171.5      2e-48   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF01743.10.fs   1/1      63   186 ..     1   156 []   171.5    2e-48
PF01743.10.ls   1/1      63   186 ..     1   156 []   173.3  5.7e-49

Alignments of top-scoring domains:
PF01743.10.fs: domain 1 of 1, from 63 to 186: score 171.5, E = 2e-48
                   *->aYlVGGaVRDlLLGrtpGeekDvDfatnGfdptllAtPeqvatlFrn
                      ++++GGaVRDlL G +p    D+Dfat+       AtP+q++++F+ 
     fh12075    63    LRIAGGAVRDLLNGVKP---QDIDFATT-------ATPTQMKEMFQS 99   

                   riivhllsrGkefgtihvlfgkqikSkHlEvATfRtesdesdgrnpksve
                     i++   rG+++gti+ + + +     +E++T+R++ +  dgr+  +ve
     fh12075   100 AGIRMINNRGEKHGTITARLHEEN----FEITTLRID-VTTDGRHA-EVE 143  

                   ftensrIlrdvFGsleeDLkRRDFTINAlaydlvdvpndGeviDyfgRGi
                   ft+          +++ D+ RRD+TIN+++       +dG+++Dyf+ G+
     fh12075   144 FTT----------DWQKDAERRDLTINSMFLG-----FDGTLFDYFN-GY 177  

                   kDLkngviR<-*
                    DLkn+++R   
     fh12075   178 EDLKNKKVR    186  

PF01743.10.ls: domain 1 of 1, from 63 to 186: score 173.3, E = 5.7e-49
                   *->aYlVGGaVRDlLLGrtpGeekDvDfatnGfdptllAtPeqvatlFrn
                      ++++GGaVRDlL G +p    D+Dfat+       AtP+q++++F+ 
     fh12075    63    LRIAGGAVRDLLNGVKP---QDIDFATT-------ATPTQMKEMFQS 99   

                   riivhllsrGkefgtihvlfgkqikSkHlEvATfRtesdesdgrnpksve
                     i++   rG+++gti+ + + +     +E++T+R++ +  dgr+  +ve
     fh12075   100 AGIRMINNRGEKHGTITARLHEEN----FEITTLRID-VTTDGRHA-EVE 143  

                   ftensrIlrdvFGsleeDLkRRDFTINAlaydlvdvpndGeviDyfgRGi
                   ft+          +++ D+ RRD+TIN+++       +dG+++Dyf+ G+
     fh12075   144 FTT----------DWQKDAERRDLTINSMFLG-----FDGTLFDYFN-GY 177  

                   kDLkngviR<-*
                    DLkn+++R   
     fh12075   178 EDLKNKKVR    186  

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